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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Niben101Scf02289g04005.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | GRAS | ||||||||
| Protein Properties | Length: 134aa MW: 15044.6 Da PI: 11.3059 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 47.1 | 4.1e-15 | 32 | 114 | 39 | 121 |
GRAS 39 qRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisq 121
qRlaa f+ La rl++ ++lykal+ + +++++++ ++ +f + +P+l f++ + N+ + +a+++++ +H++D++ ++
Niben101Scf02289g04005.1 32 QRLAAWFASSLAIRLVKRRPGLYKALNHGGQVPNRTVDHDRSRIIFAKSFPYLGFAYAVINRVLIQAISEDRIIHVVDLGSGH 114
9****************************9999**********************************************9876 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 10.859 | 1 | 134 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 1.4E-12 | 32 | 114 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 134 aa Download sequence Send to blast |
MQRLAAWFAS SLAIRLVKRR PGLYKALNHG GQRLAAWFAS SLAIRLVKRR PGLYKALNHG 60 GQVPNRTVDH DRSRIIFAKS FPYLGFAYAV INRVLIQAIS EDRIIHVVDL GSGHTNCGYL 120 SSKILSIYQM DLPI |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 44 | 49 | RLVKRR |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016461877.1 | 1e-41 | PREDICTED: scarecrow-like protein 3 | ||||
| TrEMBL | A0A1S3ZCB6 | 2e-40 | A0A1S3ZCB6_TOBAC; scarecrow-like protein 3 | ||||
| STRING | XP_009603019.1 | 1e-40 | (Nicotiana tomentosiformis) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G50420.1 | 2e-15 | scarecrow-like 3 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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