PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02289g05016.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 94aa MW: 10691.4 Da PI: 10.4241

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02289g05016.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.6	2.4e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ienk+nrqvtf+kRrng+lKKA+ELSvLC+aeva+iifs++gklye+ss Niben101Scf02289g05016.1 9 KKIENKINRQVTFAKRRNGLLKKAYELSVLCEAEVALIIFSTRGKLYEFSS 59 78***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.2E-39	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	32.898	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.79E-33	2	81	IPR002100	Transcription factor, MADS-box
CDD	cd00265	9.08E-41	2	78	No hit	No description
PRINTS	PR00404	2.3E-32	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.5E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-32	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-32	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 94 aa Download sequence Send to blast
MGRGRVELKK IENKINRQVT FAKRRNGLLK KAYELSVLCE AEVALIIFST RGKLYEFSST 60 SNTLKTLERY QKCSYGTLEV KQSGRDSNEG VLKA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	6e-20	1	61	1	61	MEF2C
5f28_B	6e-20	1	61	1	61	MEF2C
5f28_C	6e-20	1	61	1	61	MEF2C
5f28_D	6e-20	1	61	1	61	MEF2C
6byy_A	5e-20	1	61	1	61	MEF2 CHIMERA
6byy_B	5e-20	1	61	1	61	MEF2 CHIMERA
6byy_C	5e-20	1	61	1	61	MEF2 CHIMERA
6byy_D	5e-20	1	61	1	61	MEF2 CHIMERA
6bz1_A	6e-20	1	61	1	61	MEF2 CHIMERA
6bz1_B	6e-20	1	61	1	61	MEF2 CHIMERA
6bz1_C	6e-20	1	61	1	61	MEF2 CHIMERA
6bz1_D	6e-20	1	61	1	61	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009589584.1	6e-57	PREDICTED: developmental protein SEPALLATA 1-like isoform X1
Refseq	XP_009589591.1	5e-57	PREDICTED: developmental protein SEPALLATA 1-like isoform X2
Refseq	XP_009757345.1	8e-57	PREDICTED: developmental protein SEPALLATA 1-like isoform X1
Refseq	XP_016476136.1	6e-57	PREDICTED: developmental protein SEPALLATA 1-like isoform X1
Refseq	XP_016509299.1	8e-57	PREDICTED: developmental protein SEPALLATA 1-like
Swissprot	Q8LLR2	2e-46	MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBL	A0A1S4AHK7	1e-55	A0A1S4AHK7_TOBAC; developmental protein SEPALLATA 1-like isoform X1
TrEMBL	A0A1S4D7L8	2e-55	A0A1S4D7L8_TOBAC; developmental protein SEPALLATA 1-like
TrEMBL	A0A1U7V6J0	2e-55	A0A1U7V6J0_NICSY; developmental protein SEPALLATA 1-like isoform X1
TrEMBL	A5GZC6	6e-56	A5GZC6_NICLS; Putative transcription factor SEPALATTA (Fragment)
STRING	XP_009757345.1	3e-56	(Nicotiana sylvestris)
STRING	XP_009589584.1	2e-56	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02310.1	3e-48	MIKC_MADS family protein

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]