PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02294g01001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 354aa    MW: 38852.3 Da    PI: 4.8445
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02294g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.4e-16214250135
                      GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                               C++Cg ++  Tp +Rrgp+g++tLCnaCGl+++ kg+
  Niben101Scf02294g01001.1 214 CQHCGISEseTPAMRRGPSGPRTLCNACGLMWANKGM 250
                               *****99999***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.61776111IPR010399Tify domain
SMARTSM009791.1E-976111IPR010399Tify domain
PfamPF062003.0E-1180110IPR010399Tify domain
PROSITE profilePS5101712.709145187IPR010402CCT domain
PfamPF062031.1E-14145186IPR010402CCT domain
SMARTSM004011.4E-10208261IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.2E-15212254IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577169.5E-12212260No hitNo description
CDDcd002022.14E-15213269No hitNo description
PROSITE patternPS003440214241IPR000679Zinc finger, GATA-type
PfamPF003201.7E-13214249IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEAPNSRAIG FDEECMNVAI RVDEYGGGGF DADDIRGGCE SSGTEELQHV CSSVPPLAAS  60
PVVDTDGRVL VAMPMPSRRT SELTISFEGQ VYVFPAVTPD KVQAVLLLLG GSDRASYVPS  120
SRSLALQTIK SVDNDAPTRP NISRRIASLI RFREKRKERC FEKKVRYTCR KEVAQRMHRK  180
NGQFASLKDG EETYAGNIDS GDSIPHPEPT LRRCQHCGIS ESETPAMRRG PSGPRTLCNA  240
CGLMWANKGM LRDITKGGRR TPFDKSEPRT PDIKLCTLAP ENSYQKQYQE DMQEASENFV  300
DNSPVGVGSS LADIDEEDNH DELANASGTE FEIPASFDEQ IGIDSHMGAD WPGT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019231402.10.0PREDICTED: GATA transcription factor 19-like isoform X2
SwissprotQ5Z4U51e-55GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A314KHV40.0A0A314KHV4_NICAT; Gata transcription factor 28
STRINGXP_009776483.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56022035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.23e-47ZIM-LIKE 2