PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02294g01002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 328aa    MW: 35045.5 Da    PI: 5.648
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02294g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA42.77.7e-14248275734
                      GATA   7 tkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                               ++Tp++Rrgp g+++LCnaCGl+++ kg
  Niben101Scf02294g01002.1 248 KSTPMMRRGPAGPRSLCNACGLKWANKG 275
                               57**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.6E-12111146IPR010399Tify domain
PROSITE profilePS5132014.818111146IPR010399Tify domain
PfamPF062001.0E-12114145IPR010399Tify domain
PROSITE profilePS5101713.056178220IPR010402CCT domain
PfamPF062035.9E-16178220IPR010402CCT domain
PROSITE profilePS501148.866236282IPR000679Zinc finger, GATA-type
SMARTSM004015.7E-6236288IPR000679Zinc finger, GATA-type
CDDcd002025.49E-11246287No hitNo description
SuperFamilySSF577161.38E-7248285No hitNo description
PfamPF003207.3E-12248275IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.8E-12248281IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAESNRRANM YGRETINAAL SHQQTQIDDD DDDDVAAGTE GGGGGGADGG RESMDNNPNI  60
RYDHHHQSQS HSHALHNGGE SMEMNGVEGV SHNELYCPPN TEIVQAAVTA GSGASDQLTL  120
SFQGEVYVFD AVSPEKVQAV LLLLGGYEVP AGIPTVSVAT QSQRALADFP GRLNQPQRAA  180
SLNRFREKKK ERCFDKKIRY TVRKEVAMRM QRKKGQFTSS KSISDEAGSS SADWNEGSGQ  240
EEQETSSKST PMMRRGPAGP RSLCNACGLK WANKGILRDL SKVPTPGPQD QTAKSGEQSN  300
GEPNGSAAIA AAAIITPDGD NTVVTAER
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609389.10.0PREDICTED: GATA transcription factor 28-like
SwissprotQ8GXL76e-76GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1S4B0D60.0A0A1S4B0D6_TOBAC; GATA transcription factor 24-like
STRINGXP_009609389.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-74ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]