PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02316g03001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 250aa    MW: 28525 Da    PI: 5.2583
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02316g03001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-2097146255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               ++ GVr+++ +grW+AeIrd s+   r kr++lg+++t+eeAa  +++a+ kl+g
  Niben101Scf02316g03001.1  97 KFMGVRQRP-WGRWAAEIRD-ST---RgKRVWLGTYDTPEEAATVYDEAAVKLKG 146
                               899******.**********.33...34************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381238.2E-882242IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000182.17E-3196154No hitNo description
Gene3DG3DSA:3.30.730.104.0E-2997155IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2197154IPR016177DNA-binding domain
PfamPF008471.6E-1397146IPR001471AP2/ERF domain
SMARTSM003801.6E-3597160IPR001471AP2/ERF domain
PROSITE profilePS5103222.68297154IPR001471AP2/ERF domain
PRINTSPR003677.8E-998109IPR001471AP2/ERF domain
PRINTSPR003677.8E-9120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MVVSKTVKFS QHIVTKNKHV PEQNEKSNFH SKFSQRVVRI ILTDADATDS SDDERQNTGR  60
RVKRHVTEIN LMPSPNLICE KKRRLLSPDT DVTCRKKFMG VRQRPWGRWA AEIRDSTRGK  120
RVWLGTYDTP EEAATVYDEA AVKLKGPDAV TNFPKVLTAD ITETESVTDG GEKSENDVAL  180
SPTSVLRNDY FTPFDDLRFC EVDAFGFDVD SLFRLPVFGM SEKYYGEEFG EFDFDDFALE  240
ARSCGLFCCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-19971541472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009607079.11e-158PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
RefseqXP_016468771.11e-158PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046821e-112PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A1S3ZWU71e-156A0A1S3ZWU7_TOBAC; pathogenesis-related genes transcriptional activator PTI6-like
STRINGXP_009607079.11e-157(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52272137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-30cytokinin response factor 4