PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02320g00005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 64aa MW: 7112.23 Da PI: 4.9391

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02320g00005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	47.1	7.1e-15	6	55	48	97
DUF260 48 alpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 ++p ++reda+ s+vyeA ar+rdP yG+vg+i++lq+++ +l++el+++ Niben101Scf02320g00005.1 6 EIPVDNREDAVISMVYEATARLRDPAYGCVGIISALQKHVFHLQSELNEA 55 568899****************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.061	1	59	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.7E-14	6	54	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 64 aa Download sequence Send to blast
MLRVLEIPVD NREDAVISMV YEATARLRDP AYGCVGIISA LQKHVFHLQS ELNEALGEAM 60 SLRA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009631247.2	4e-32	PREDICTED: LOB domain-containing protein 4-like
Swissprot	Q9SHE9	2e-12	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A1S4CR38	1e-30	A0A1S4CR38_TOBAC; LOB domain-containing protein 25-like isoform X2
TrEMBL	A0A1S4CRC5	1e-30	A0A1S4CRC5_TOBAC; LOB domain-containing protein 25-like isoform X1
STRING	Solyc06g082770.2.1	6e-30	(Solanum lycopersicum)
STRING	PGSC0003DMT400071132	6e-30	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13147	14	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	6e-16	LOB domain-containing protein 25