PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02322g07005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 571aa    MW: 63516.6 Da    PI: 8.553
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02322g07005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.51e-1718981298
                              HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                        B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                               s  l +p kf+++++g    s t  l  +sg+sW + l   ++++  ++ +GW +Fvk++ L+ gD +vF++dg+  f   v +f+
  Niben101Scf02322g07005.1 18 HSETLKIPSKFVKHMEGR--ASGTTFLVGPSGNSWPMDL--IQQDDDLFFHNGWASFVKDHCLENGDALVFRYDGDLHF--AVLAFD 98
                              56679*******777777..4458999************..999999**************************997555..677666 PP
2B357.42.7e-18236330198
                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                               f kv+++ +v+ s  l +p +fa+eh   +++++++ l +++g++W+v+ i  ++ + ++++ +GW +Fv++n+++ gD+++F+l
  Niben101Scf02322g07005.1 236 FTKVMKRFNVSGSYTLNIPYQFATEHL--PKCKVKILLHNLKGKTWTVNSIPtTRVQTSHTFCGGWLSFVRDNNIDLGDICIFEL 318
                               889999999*****************6..34999****************77566666699***********************9 PP

                               -SSSEE..EEEEE- CS
                        B3  85 dgrsefelvvkvfr 98 
                               +++ e  l+v+v+r
  Niben101Scf02322g07005.1 319 ISKCE--LRVHVLR 330
                               98544..5888877 PP
3B348.81.3e-15460545997
                               HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                        B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                               + + s  l +p +f  eh   +++ ++++l++++g+ W+v+ i + k ++ +++ +GW+ Fv++n+++ gD+++F+l+g+ e  +
  Niben101Scf02322g07005.1 460 NISGSFTLKVPYQFSMEHL--PNCRTKIVLRNLKGECWTVNSIPTMKVQTlHTFCGGWSAFVRDNDIQMGDICIFELVGKYE--M 540
                               5556678999****99996..45889****************8888887789999**********************98544..4 PP

                               EEEEE CS
                        B3  93 vvkvf 97 
                               +v+++
  Niben101Scf02322g07005.1 541 RVHIC 545
                               56555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.49E-233102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-223101IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.8317100IPR003340B3 DNA binding domain
CDDcd100174.00E-17798No hitNo description
SMARTSM010191.0E-119100IPR003340B3 DNA binding domain
PfamPF023622.4E-151698IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-24228330IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-25229331IPR015300DNA-binding pseudobarrel domain
CDDcd100175.18E-21234330No hitNo description
SMARTSM010199.3E-16236332IPR003340B3 DNA binding domain
PROSITE profilePS5086313.831236332IPR003340B3 DNA binding domain
PfamPF023628.1E-16236330IPR003340B3 DNA binding domain
SuperFamilySSF1019361.2E-23447550IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-23447544IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-19450545No hitNo description
SMARTSM010194.9E-12452548IPR003340B3 DNA binding domain
PROSITE profilePS5086312.464452548IPR003340B3 DNA binding domain
PfamPF023625.4E-13452545IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MWDAKRPHFL VGFNPSIHSE TLKIPSKFVK HMEGRASGTT FLVGPSGNSW PMDLIQQDDD  60
LFFHNGWASF VKDHCLENGD ALVFRYDGDL HFAVLAFDES SCEKEAAYNA DCSQGATNLY  120
NLALKKRDRG NSALLECIVE GVPKKMRSSQ IPSECTAEDT VCSNGRIYAS SFLNEMENAG  180
NASTNTVTIA VPSQTEIVCS NSEVKTGNGT SEEPMWLTVQ EAEKVARSFT SSFPSFTKVM  240
KRFNVSGSYT LNIPYQFATE HLPKCKVKIL LHNLKGKTWT VNSIPTTRVQ TSHTFCGGWL  300
SFVRDNNIDL GDICIFELIS KCELRVHVLR VEKEGNDYSS KVVKLAADYA STSVKISGCK  360
LTKVGENSNL CLQQVAKAKT YDKNGSAHGK EKHGNILKSH QLRLSKISSG DSVIRKPAQD  420
KQGSFTKSCM SIKSVPEEKL AAESFISNFP HFVRIMKKFN ISGSFTLKVP YQFSMEHLPN  480
CRTKIVLRNL KGECWTVNSI PTMKVQTLHT FCGGWSAFVR DNDIQMGDIC IFELVGKYEM  540
RVHICVIGKK GLDYRNGITS NESAILASLR S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009588428.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_009588429.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_009588430.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
TrEMBLA0A1U7X3F00.0A0A1U7X3F0_NICSY; B3 domain-containing protein Os01g0723500-like isoform X1
STRINGXP_009588428.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-21B3 family protein