PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02340g06003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 245aa    MW: 27604.1 Da    PI: 6.292
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02340g06003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.82.1e-49151361122
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               lppGfrFhPtdeelvv+yLkkkv++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g+r+nra++sgyWka
  Niben101Scf02340g06003.1  15 LPPGFRFHPTDEELVVHYLKKKVASAPLPV-KIIAEVDLYKFDPWELPSKANFGEQEWYFFSPRDRKYPNGTRPNRAATSGYWKA 98 
                               79****************************.89***************99999******************************** PP

                       NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWv 122
                               tg dk++++  +++++g+kktLvfykg+ pkg k++W+
  Niben101Scf02340g06003.1  99 TGIDKPIYTCgGTKKIGVKKTLVFYKGKPPKGIKSNWL 136
                               ********9867788**********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-5711147IPR003441NAC domain
PROSITE profilePS5100549.55615167IPR003441NAC domain
PfamPF023653.6E-2316136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MESTGLMSGS SHLQLPPGFR FHPTDEELVV HYLKKKVASA PLPVKIIAEV DLYKFDPWEL  60
PSKANFGEQE WYFFSPRDRK YPNGTRPNRA ATSGYWKATG IDKPIYTCGG TKKIGVKKTL  120
VFYKGKPPKG IKSNWLDDWV LCRIYNKNSS STIEMDEEDS IADTTGSTSI LPALSKNYFE  180
QNPSIGALRV GSNFDEYFEN DMKMEKNEYE NGDDTSLMEG NSSSFLTMLN QISPRSSQLN  240
SLFSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-6591509171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. {ECO:0000250}.
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780447.11e-165PREDICTED: NAC transcription factor 25-like
RefseqXP_016488493.11e-165PREDICTED: NAC transcription factor 25-like
SwissprotA2YMR05e-80NAC10_ORYSI; NAC transcription factor ONAC010
SwissprotQ8GY423e-80NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A1S4BHZ51e-164A0A1S4BHZ5_TOBAC; NAC transcription factor 25-like
TrEMBLA0A1U7WKF91e-164A0A1U7WKF9_NICSY; NAC transcription factor 25-like
STRINGXP_009780447.11e-165(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18142466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-82NAC domain containing protein 25