PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02348g12005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 137aa    MW: 15332.7 Da    PI: 6.7749
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02348g12005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.82.9e-281665251
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              ri+n++ rqvtfskRrng+lKKA+EL +LCdaev viifsst klyeyss
  Niben101Scf02348g12005.1 16 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTSKLYEYSS 65
                              8***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-38766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.342767IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-28870IPR002100Transcription factor, MADS-box
CDDcd002651.18E-38877No hitNo description
PRINTSPR004041.7E-28929IPR002100Transcription factor, MADS-box
PROSITE patternPS003500963IPR002100Transcription factor, MADS-box
PfamPF003192.3E-251663IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-282944IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-284465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
REKEIEMGRG KIMIRRIDNS TSRQVTFSKR RNGLLKKAKE LAILCDAEVG VIIFSSTSKL  60
YEYSSTRAQD SPNNLIEPDL LHHSGPTDPL ILIKSQDPPA LLVEPSPMFL ELEAHCSQTL  120
LEGSYIPICQ ISIPLTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-20766160MEF2C
5f28_B7e-20766160MEF2C
5f28_C7e-20766160MEF2C
5f28_D7e-20766160MEF2C
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGOS04T0461300-014e-34(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.12e-33AGAMOUS-like 16