PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02351g06002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 257aa MW: 29917.2 Da PI: 6.4423

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02351g06002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	85.2	6.8e-27	86	140	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r++Wt+eLHerFv+av +LGG+ +A P++i++ m+v Ltl+h+kSHLQkYR+ Niben101Scf02351g06002.1 86 KRRMKWTEELHERFVNAVVELGGAWEAKPRAIKRKMQVRALTLYHIKSHLQKYRM 140 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.045	83	143	IPR017930	Myb domain
SuperFamily	SSF46689	1.51E-13	85	143	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.8E-24	86	141	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-22	86	141	IPR006447	Myb domain, plants
Pfam	PF00249	7.2E-9	88	139	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MFPLVPFAMN DNARQYRRIP ILDRHFQEPP NPLPLNNVPA MANQNHQPLI FYGELNVMNN 60 DDNHLRFFDG NVHQVEQEVD QPRLVKRRMK WTEELHERFV NAVVELGGAW EAKPRAIKRK 120 MQVRALTLYH IKSHLQKYRM TQEPDEARRR KAMKKLSLEE RQQNLLHEVE EQMKEVATKF 180 QTMLPFEDQA GSSNSVPMLP HQFPSVVLAP PPVDVYIPQP PTEAADVHVP PEMEDMVAQS 240 IAENSVEDFL RALELAH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-15	86	142	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-15	86	142	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-15	86	142	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-15	86	142	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-15	86	142	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-15	86	142	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-15	86	142	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-15	86	142	2	58	Protein PHOSPHATE STARVATION RESPONSE 1

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	87	RLVKRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009786306.1	1e-159	PREDICTED: uncharacterized protein LOC104234442 isoform X1
Refseq	XP_016513437.1	1e-159	PREDICTED: uncharacterized protein LOC107830405
TrEMBL	A0A1S4DJ92	1e-158	A0A1S4DJ92_TOBAC; uncharacterized protein LOC107830405
TrEMBL	A0A1U7X9G8	1e-158	A0A1U7X9G8_NICSY; uncharacterized protein LOC104234442 isoform X1
STRING	XP_009786306.1	1e-159	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15338	5	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	4e-20	G2-like family protein