PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02357g01004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 302aa    MW: 34710 Da    PI: 9.1282
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02357g01004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.82.1e-3169118150
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                    SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                               krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Niben101Scf02357g01004.1  69 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 118
                               79***********************************************8 PP
2K-box108.38.9e-361372334100
                     K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                               +s+ s++ea+++++qqe+akL+++i+ +q+ +R+++Ge L+sLs ++L++Le +Lek++ ++RskKnell+++ie +qk+e e+q
  Niben101Scf02357g01004.1 137 TSQGSVSEANTQYYQQEAAKLRRQIRDIQTYNRQIVGEALSSLSPRDLKNLEGKLEKAIGRVRSKKNELLFSEIEVMQKREIEMQ 221
                               455569******************************************************************************* PP

                     K-box  89 eenkaLrkklee 100
                               ++n++Lr+k++e
  Niben101Scf02357g01004.1 222 NANMYLRAKIAE 233
                               *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-4061120IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.26361121IPR002100Transcription factor, MADS-box
CDDcd002653.22E-4562138No hitNo description
SuperFamilySSF554553.4E-3362137IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-336383IPR002100Transcription factor, MADS-box
PROSITE patternPS00350063117IPR002100Transcription factor, MADS-box
PfamPF003191.3E-2670117IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-338398IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-3398119IPR002100Transcription factor, MADS-box
PfamPF014862.2E-25145231IPR002487Transcription factor, K-box
PROSITE profilePS5129714.515147237IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEPAKSKEGN AERDEGDHDE DSGKGIAKTY TQKVVLRLDA LERKMEFPNE EFESSNSQRK  60
SGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYANN  120
SVRATIDRYK KHHADSTSQG SVSEANTQYY QQEAAKLRRQ IRDIQTYNRQ IVGEALSSLS  180
PRDLKNLEGK LEKAIGRVRS KKNELLFSEI EVMQKREIEM QNANMYLRAK IAEVERAQQQ  240
MNLMPGGSEY SHHQQQPMST SQNYNDARNF LPVNLLEPNP HYSRHDDQTA LQLVGIEIVI  300
LN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A4e-2062133172MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B4e-2062133172MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C4e-2062133172MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D4e-2062133172MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A4e-2062145186Myocyte-specific enhancer factor 2A
3kov_B4e-2062145186Myocyte-specific enhancer factor 2A
3kov_I4e-2062145186Myocyte-specific enhancer factor 2A
3kov_J4e-2062145186Myocyte-specific enhancer factor 2A
3p57_A4e-2062145186Myocyte-specific enhancer factor 2A
3p57_B4e-2062145186Myocyte-specific enhancer factor 2A
3p57_C4e-2062145186Myocyte-specific enhancer factor 2A
3p57_D4e-2062145186Myocyte-specific enhancer factor 2A
3p57_I4e-2062145186Myocyte-specific enhancer factor 2A
3p57_J4e-2062145186Myocyte-specific enhancer factor 2A
5f28_A4e-2062145287MEF2C
5f28_B4e-2062145287MEF2C
5f28_C4e-2062145287MEF2C
5f28_D4e-2062145287MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762633.10.0PREDICTED: floral homeotic protein AGAMOUS isoform X2
RefseqXP_009762634.10.0PREDICTED: floral homeotic protein AGAMOUS isoform X3
RefseqXP_016486565.10.0PREDICTED: floral homeotic protein AGAMOUS-like isoform X2
SwissprotQ93XH41e-124MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLI3QNW20.0I3QNW2_NICBE; Shatterproof
STRINGXP_009762632.11e-178(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-112MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]