PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02381g02004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 299aa    MW: 32247.3 Da    PI: 6.9015
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02381g02004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.56.5e-314106198
                    DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                               +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +l+l++a p++ r+++++sl+yeA+ r+ +P+yG+vg++
  Niben101Scf02381g02004.1   4 SCNGCRVLRKGCSESCSIRPCLqwiktPESQSNATVFLAKFYGRAGLLNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLL 88 
                               6************************************************************************************ PP

                    DUF260  81 lklqqqleqlkaelallk 98 
                               +++++ql+q ++e++l +
  Niben101Scf02381g02004.1  89 WSGNWQLCQNAVEAVLKG 106
                               ************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.6063109IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-244102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSESCS IRPCLQWIKT PESQSNATVF LAKFYGRAGL LNLINAGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWQLCQNAV EAVLKGAPVT PIASEVAVNN  120
NGPPLKLPYD IRHINKDDNA IKSNDLHRVR TRCRFKRSAT NTKAAKANPV CSGSGDESAH  180
EKVNGSTSHD SSLSHQSEAA AVAAPNAQCE SREIASLQSA DIVEGEDSTA VEPASVSQVD  240
DRAEDGEIEL ELTLGFASFA TSHGKPKDTK RSEAVHLVDA AGECKMELGL TFRCDQFSF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801662.10.0PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8867e-95LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A1U7YC060.0A0A1U7YC06_NICSY; LOB domain-containing protein 41-like
STRINGXP_009801662.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.15e-91LOB domain-containing protein 41