PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02397g00007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 156aa    MW: 16974.7 Da    PI: 7.439
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02397g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.14.3e-082253255
                       AP2 32 slgkfgtaeeAakaaiaarkkleg 55
                              +lg+f+t eeAa+a+++a+  l+g
  Niben101Scf02397g00007.1  2 WLGTFDTVEEAAQAYDEAACLLRG 25
                              9******************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.0E-13133IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-9133IPR016177DNA-binding domain
CDDcd000181.49E-15132No hitNo description
SMARTSM003807.1E-5139IPR001471AP2/ERF domain
PROSITE profilePS5103211.482133IPR001471AP2/ERF domain
PfamPF008472.0E-4225IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MWLGTFDTVE EAAQAYDEAA CLLRGSNTRT NFYNHSPVNP ALSTKIRNLL NQKKSLNKIN  60
SKNSTTTIAA AATATITSCT SSLSVSNSFS SNTDTSGSRS HQENQIFGDA YKPDLSFFMA  120
GFDQMGSSNF DHSSTFSTDF DKILLDEKVG AKRRGC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019256553.13e-74PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A1J6HV546e-73A0A1J6HV54_NICAT; Ethylene-responsive transcription factor rap2-11
STRINGXP_009804161.18e-71(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20182261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-20related to AP2 11