PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02398g00005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 483aa    MW: 53594.7 Da    PI: 5.5471
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02398g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.9e-12305348755
                               HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                 Er+ R+ri+++++ Lr l+P+ +      K++K++iL  A++YI++Lq
  Niben101Scf02398g00005.1 305 VTERKLRNRIKDGLFALRALVPNiS------KMDKVAILGDAIDYINELQ 348
                               57*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-187159IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000838.09E-13296352No hitNo description
PROSITE profilePS5088814.71298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-15300365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-13304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-16305366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-10306348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MERAMEWLRP LVDSNNWDYC VVWKLGDDPS RFIEWIGCCC SGAKGVDVNV KKENGGQLTF  60
TTLCRDSQIQ HPITTKACEA LAHFPLSICL YSGIQGEVVT SNEPKWINHT DVSNSNLSNY  120
PWQELKGTLV LIPVAGGLVE LYNSKLIHKD QKTIDFIINR FKLGSEKANS STAKREDPPL  180
DSFPFEKLSF CAPPLYTSSP SSATFISQVS ESSANPSIQG SPTGSIPSNE PTLCHSTSDH  240
LSRSIPLSQS SDVYFEHTEL QCSGNLSRME GTVFPRNQEN CMIAGDVYPM GKKRQRGPYQ  300
SKNLVTERKL RNRIKDGLFA LRALVPNISK MDKVAILGDA IDYINELQEN VKLYQAELNE  360
IAAEVSNNGS SEVVLSDMSE MSKVTGPTNE KTQIPINTTK RTRMEVEVNQ IGAREFLLKV  420
FGSRKPGGFT QLLEAMNSLG LEVVNTNFTT SGEEILSIFI ARANDDRVFE AQQLRSSLIE  480
LTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290296GKKRQRG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768126.10.0PREDICTED: transcription factor bHLH90 isoform X2
TrEMBLA0A1U7VT590.0A0A1U7VT59_NICSY; transcription factor bHLH90 isoform X2
STRINGXP_009768125.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99292227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.11e-76bHLH family protein