PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02417g08001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 316aa    MW: 35453.9 Da    PI: 6.6818
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02417g08001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.1e-13130177355
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               + h  +Er+RR+r+ ++f  L  l+P++     kKl+Ka++L  A++Y+k+L+
  Niben101Scf02417g08001.1 130 QDHVVAERKRRERLTQRFVALSALIPNL-----KKLDKASVLGDAIKYMKQLE 177
                               56999***********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.669127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-11130177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-17131189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-16132187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-13132181No hitNo description
SMARTSM003533.9E-15133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.895240316IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDMSSATWWS KMEKTNMNDH SSINNINNFQ MVTPFNELPF NKPFSSCNYG YSSTSPSANT  60
TIAASLNQFE ALNYTSVNTE LTSGTTLNFS SSMGSDDFGD SQNLIQALGF GSADTTTQKK  120
SYNRTSLQAQ DHVVAERKRR ERLTQRFVAL SALIPNLKKL DKASVLGDAI KYMKQLEEQV  180
KTLEEKAKNI CSEESVVVVK RARVLTSYDD YSSSSDENSS ISIDRSFPDI EVRVSDGNFM  240
ISIYCKKQKG IIKEIFNEVE KLHLSIISSS VMPFGYNTTH MTIIAQMDYK LSMTPNHVAN  300
RIRAVMMKEE DTTLTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13131186864Transcription factor MYC2
5gnj_B2e-13131186864Transcription factor MYC2
5gnj_E2e-13131186864Transcription factor MYC2
5gnj_F2e-13131186864Transcription factor MYC2
5gnj_G2e-13131186864Transcription factor MYC2
5gnj_I2e-13131186864Transcription factor MYC2
5gnj_M2e-13131186864Transcription factor MYC2
5gnj_N2e-13131186864Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135140ERKRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016507543.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A1S4D2J20.0A0A1S4D2J2_TOBAC; transcription factor bHLH18-like
STRINGXP_009594425.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45081443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-46bHLH family protein