PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02420g03014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 338aa    MW: 39053.4 Da    PI: 6.2345
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02420g03014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1713.6e-5371361129
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgy 82 
                               +ppGfrFhPtdeelv++yL+kk++++++++ +vik++d+yk+ePwdL++  ++ +ee+ +wyfFs++dkky+tg+r+nrat++g+
  Niben101Scf02420g03014.1   7 VPPGFRFHPTDEELVDYYLRKKITSRRIDV-DVIKDIDLYKIEPWDLQElcRMGTEEQsDWYFFSHKDKKYPTGTRTNRATAAGF 90 
                               69****************************.9***************954555554445************************** PP

                       NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                               Wkatg+dk+++s k+ l+g++ktLv+ykgrap+g+k+d +mheyrle
  Niben101Scf02420g03014.1  91 WKATGRDKAIYS-KHDLIGMRKTLVYYKGRAPNGQKSDFIMHEYRLE 136
                               ************.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-545141IPR003441NAC domain
PROSITE profilePS5100551.3397152IPR003441NAC domain
PfamPF023653.7E-278135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MNYFSQVPPG FRFHPTDEEL VDYYLRKKIT SRRIDVDVIK DIDLYKIEPW DLQELCRMGT  60
EEQSDWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVYYKGRA  120
PNGQKSDFIM HEYRLETDPN GAPQATMRMD TSEHGSPIWY DDQLSFMPDN MDSPKPQYPH  180
SNTIINYNHN YPNNYPNCKK ELDNLHYQIS PHHQNQQFLQ LPLLETNSKL LAAAPPGISC  240
SSMPIFGINV NQEHMHPTFG NNLNRGCIND QVEDQVTDWR VLDKFVASQL SQEDENNYSN  300
AANARGDNSN LKVKNLDKQE LAPENTSTAS SSSQIDLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-46713515140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791743.10.0PREDICTED: NAC domain-containing protein 7-like
RefseqXP_016461118.10.0PREDICTED: NAC domain-containing protein 7-like
SwissprotQ9FWX21e-116NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A1S3Z9R10.0A0A1S3Z9R1_TOBAC; NAC domain-containing protein 7-like
TrEMBLA0A1U7XLH60.0A0A1U7XLH6_NICSY; NAC domain-containing protein 7-like
STRINGXP_009791743.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.12e-94NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]