PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02420g08014.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 234aa MW: 26672 Da PI: 6.2522

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02420g08014.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.9	3.1e-12	81	133	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++++h e+Er+RR+++ + ++ Lr+ lP ++K s ++ +A +YI +Lq Niben101Scf02420g08014.1 81 KKVMHREIERQRRQEMATLYASLRQQLPLE--IIKGKRSTSDHILEAANYIEHLQ 133 6899***********************7..4*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-13	77	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.19E-10	78	137	No hit	No description
PROSITE profile	PS50888	12.944	80	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-9	81	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.1E-9	82	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0027	86	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MMDNFHSIFP LQQDVDDNDS HQLLYTNPCN FLYQQDLVTD FAPLELDKNT LSFNNNEKGN 60 KVGKASAASL PVEKTSDDKQ KKVMHREIER QRRQEMATLY ASLRQQLPLE IIKGKRSTSD 120 HILEAANYIE HLQKNVRNLE DKREKLNKAS NSSNRDYTKS GSSSTSDSLS STIVTVKQCL 180 DGMEFLVNCG VEREGFRLSR VLEILLQEGL NIVASQAMID VHVIQQKIYD ISFS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009804982.1	1e-145	PREDICTED: transcription factor bHLH118-like
Refseq	XP_009804989.1	1e-145	PREDICTED: transcription factor bHLH118-like
Refseq	XP_016452590.1	1e-145	PREDICTED: transcription factor bHLH118-like
TrEMBL	A0A1S3YKF9	1e-143	A0A1S3YKF9_TOBAC; transcription factor bHLH118-like
TrEMBL	A0A1U7YLP6	1e-143	A0A1U7YLP6_NICSY; transcription factor bHLH118-like
STRING	XP_009804982.1	1e-144	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA598	24	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	2e-29	bHLH family protein