PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02429g04002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 436aa    MW: 48261.9 Da    PI: 4.6899
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02429g04002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS412.9e-13117210188
                      GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal...ppsetseknsseela 79 
                               lv+lL+++Aea+s  +++  la+ +L rl+elasp+g ++m+Rlaa+ft AL+a l +  s+  +a    + + ++e+++ ++la
  Niben101Scf02429g04002.1 117 LVHLLMAAAEALSGANKSreLARVILVRLKELASPNGsSNMERLAAHFTDALQALLDGAASGSLHAKnmfSLNYKDEQQQGDVLA 201
                               68**********987665559****************889****************99666655554002444455555888899 PP

                      GRAS  80 alklfsevs 88 
                               a++l++++s
  Niben101Scf02429g04002.1 202 AFQLLQDIS 210
                               999998875 PP
2GRAS152.15e-47215430156374
                      GRAS 156 eeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvv 240
                                +++etg+rL+ fA+++g pf f+    ++ e++++++L++ +gEa+++n++l+l ++  +  ++     ++L+  k+l+P++v+
  Niben101Scf02429g04002.1 215 GTVQETGRRLTAFAASIGQPFLFHHCRLESDETFKPSALKLVRGEAIIINCMLHLPHFTYRASDS---VASFLSGSKTLNPRLVT 296
                               5789*********************99999***************************98554444...459************** PP

                      GRAS 241 vveqeadh..nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323
                               +ve+e+    ++e F+ rf++ l++ysal+dslea++p +  +r+ vEr++lg++i   +    +   e++    +W e+l+++G
  Niben101Scf02429g04002.1 297 LVEEEVRPigEEEGFVGRFMDILHHYSALYDSLEAGFPLQCGARALVERVFLGPRIAGSLFRIYRTWGEDE--RCSWGEWLSAVG 379
                               *****998767889**********************************************99998844444..478********* PP

                      GRAS 324 Fkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                               +++ ++s  + +qaklll  ++ dgyrvee   + lvlgWk+r+L+s+S W+
  Niben101Scf02429g04002.1 380 YRESNISFANHCQAKLLLGLFN-DGYRVEEIgTNKLVLGWKSRRLLSASIWT 430
                               **********************.******9768999***************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035149.9E-11117210IPR005202Transcription factor GRAS
PfamPF035141.7E-44215430IPR005202Transcription factor GRAS
PROSITE profilePS5098516.92217410IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MTVDDTIPDF DYYGGLSTST TTTTTTITTT TSSSDDDHDH GCTWNDWSPV VDWDAFSGGN  60
NFQDLIESMI EGNNCSGGLN MSMPKSTTFY NSEDSVLMEE SEESNNNQSE DVNGLKLVHL  120
LMAAAEALSG ANKSRELARV ILVRLKELAS PNGSSNMERL AAHFTDALQA LLDGAASGSL  180
HAKNMFSLNY KDEQQQGDVL AAFQLLQDIS RRSFGTVQET GRRLTAFAAS IGQPFLFHHC  240
RLESDETFKP SALKLVRGEA IIINCMLHLP HFTYRASDSV ASFLSGSKTL NPRLVTLVEE  300
EVRPIGEEEG FVGRFMDILH HYSALYDSLE AGFPLQCGAR ALVERVFLGP RIAGSLFRIY  360
RTWGEDERCS WGEWLSAVGY RESNISFANH CQAKLLLGLF NDGYRVEEIG TNKLVLGWKS  420
RRLLSASIWT TPDSDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A9e-22213430167378Protein SCARECROW
5b3h_D9e-22213430167378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019266231.10.0PREDICTED: nodulation-signaling pathway 2 protein
SwissprotQ5NE241e-118NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A314L0K20.0A0A314L0K2_NICAT; Nodulation-signaling pathway 2 protein
STRINGXP_009799696.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122411923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-80GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]