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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Niben101Scf02430g03006.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | WRKY | ||||||||
| Protein Properties | Length: 587aa MW: 65633.7 Da PI: 8.4043 | ||||||||
| Description | WRKY family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | WRKY | 105.1 | 3.7e-33 | 253 | 310 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
+DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkver+ d++++ei+Y+g+Hnh+k
Niben101Scf02430g03006.1 253 EDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERNL-DGHITEIVYKGNHNHPK 310
8****************************************.***************85 PP
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| 2 | WRKY | 105.9 | 2.1e-33 | 417 | 475 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+
Niben101Scf02430g03006.1 417 LDDGYRWRKYGQKVVKGNPNPRSYYKCTFTGCPVRKHVERASHDLRAVITTYEGKHNHD 475
59********************************************************7 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.20.25.80 | 5.8E-28 | 246 | 311 | IPR003657 | WRKY domain |
| PROSITE profile | PS50811 | 23.456 | 247 | 311 | IPR003657 | WRKY domain |
| SuperFamily | SSF118290 | 1.26E-24 | 248 | 311 | IPR003657 | WRKY domain |
| SMART | SM00774 | 2.1E-35 | 252 | 310 | IPR003657 | WRKY domain |
| Pfam | PF03106 | 9.7E-25 | 253 | 309 | IPR003657 | WRKY domain |
| Gene3D | G3DSA:2.20.25.80 | 2.9E-37 | 402 | 477 | IPR003657 | WRKY domain |
| SuperFamily | SSF118290 | 2.62E-29 | 409 | 477 | IPR003657 | WRKY domain |
| PROSITE profile | PS50811 | 38.067 | 412 | 477 | IPR003657 | WRKY domain |
| SMART | SM00774 | 4.3E-39 | 417 | 476 | IPR003657 | WRKY domain |
| Pfam | PF03106 | 9.5E-26 | 418 | 475 | IPR003657 | WRKY domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 587 aa Download sequence Send to blast |
MASSGGNMNT FMNSFTSNYS FSSFSDLLSD NDHNNMRSNN SSMNQEKNSL NWGFSDQRMN 60 QQNKDEVPKF KSFPPXKNSF NWGFSDQRMN QQNKDEVPKF KSFPPCSLPM ISSSSPASPS 120 SYLAFPPSLS PSVLLDSPVL FNNSNTLPSP TTGSFGNLNS KEDNSKISDF SFQSTAATSP 180 SMFQSSAPRN SLEDLLTRQQ QANQQNEFST VTTTGVKSEV VPIQSFSQEK MQNNPAPVHY 240 TQPSQYVREQ KAEDGYNWRK YGQKQVKGSE NPRSYYKCTF PNCPTKKKVE RNLDGHITEI 300 VYKGNHNHPK PQSTRRSSSQ SIQNLAYSNL DITNQPNAFL DNAQRDSFTG TDNSSASFGD 360 EDIDQGSPIS KSGEDDGNEP EAKRWKGDNE NEVISSASRT VREPRIVVQT TSDIDILDDG 420 YRWRKYGQKV VKGNPNPRSY YKCTFTGCPV RKHVERASHD LRAVITTYEG KHNHDVPAAR 480 GSGSYAMNKP PSGNTNNSMP VVPRPSMLAN NSNQGMNFND TFFNTRVQTT QNQLPITLQM 540 LQSSGSSSYS GFDTSSGSYM NQMQPMNNIK PISKEEPKDD FFSSFLN |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1wj2_A | 9e-34 | 253 | 478 | 8 | 78 | Probable WRKY transcription factor 4 |
| 2lex_A | 9e-34 | 253 | 478 | 8 | 78 | Probable WRKY transcription factor 4 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcription factor. Interacts specifically with the W box (5'-TTGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Involved in defense responses. Required for resistance to the necrotrophic fungal pathogen B.cinerea (PubMed:17059405, PubMed:21990940). Regulates the antagonistic relationship between defense pathways mediating responses to the bacterial pathogen P. syringae and the necrotrophic pathogen B.cinerea (PubMed:17059405). Required for the phytoalexin camalexin synthesis following infection with B.cinerea. Acts as positive regulator of the camalexin biosynthetic genes PAD3 (CYP71B15) and CYP71A13 by binding to their promoters (PubMed:21498677, PubMed:22392279). Acts downstream of MPK3 and MPK6 in reprogramming the expression of camalexin biosynthetic genes, which drives the metabolic flow to camalexin production (PubMed:21498677). Functions with WRKY25 as positive regulator of salt stress response and abscisic acid (ABA) signaling (PubMed:18839316). Functions with WRKY25 and WRKY26 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). The DNA-binding activity of WRKY33 is increased by SIB1 and SIB2 (PubMed:21990940). {ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:21336597, ECO:0000269|PubMed:21498677, ECO:0000269|PubMed:21990940, ECO:0000269|PubMed:22392279}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: By salt stress (PubMed:18839316). Induced by infection with the necrotrophic fungal pathogen B.cinerea (PubMed:17059405, PubMed:21498677, PubMed:21990940). Induced by infection with the bacterial pathogen P.syringae pv. tomato DC3000 (PubMed:17059405). {ECO:0000269|PubMed:17059405, ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:21498677, ECO:0000269|PubMed:21990940}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009797864.1 | 0.0 | PREDICTED: probable WRKY transcription factor 26 isoform X2 | ||||
| Swissprot | Q8S8P5 | 1e-123 | WRK33_ARATH; Probable WRKY transcription factor 33 | ||||
| TrEMBL | A0A0P0UVW5 | 0.0 | A0A0P0UVW5_NICBE; Transcription factor | ||||
| STRING | XP_009797862.1 | 0.0 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA2286 | 24 | 60 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G38470.1 | 1e-120 | WRKY DNA-binding protein 33 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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