PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02452g06018.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 254aa    MW: 29263.9 Da    PI: 5.0648
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02452g06018.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.14.9e-28959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krienk+ rqvtfskRr+g+lKK +ELSvLCda++ +iifs++gkl+eyss
  Niben101Scf02452g06018.1  9 KRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSTKGKLFEYSS 59
                              79***********************************************96 PP
2K-box30.31.8e-11821591196
                     K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                               + +  +l+ e++k+k+ + nLq ++ +++G+dL s +++eL++Le+qLe +        +el+ +q+e+l++ ek+l+++n+++ 
  Niben101Scf02452g06018.1  82 QDNRVELYDEITKMKRDTLNLQLSLQKYKGDDLASAQYEELNELEKQLEFA--------HELMQQQMENLRRTEKMLEKDNQEMY 158
                               44566899******************************************9........89********************9987 PP

                     K-box  96 k 96 
                               +
  Niben101Scf02452g06018.1 159 Q 159
                               6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.581161IPR002100Transcription factor, MADS-box
CDDcd002658.52E-44278No hitNo description
SuperFamilySSF554556.15E-31279IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.3E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.3885169IPR002487Transcription factor, K-box
PfamPF014865.5E-985160IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRGKIEVKR IENKTSRQVT FSKRRAGLLK KTHELSVLCD AQIGLIIFST KGKLFEYSSQ  60
PHSMSEIISR YLQTTGASIP VQDNRVELYD EITKMKRDTL NLQLSLQKYK GDDLASAQYE  120
ELNELEKQLE FAHELMQQQM ENLRRTEKML EKDNQEMYQW LMSNQIYKQQ SSSVMEHNDD  180
DQNEEAITEL NLMGEQPLLS QFTFFGEEQV QPSSNNVLQL AAASTTTSAY RLQPSHPNLQ  240
DSDLPGCSYA HLKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-19171169MEF2C
5f28_B5e-19171169MEF2C
5f28_C5e-19171169MEF2C
5f28_D5e-19171169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019262752.10.0PREDICTED: MADS-box protein FBP24
RefseqXP_019262753.10.0PREDICTED: MADS-box protein FBP24
SwissprotQ9ATE51e-133FBP24_PETHY; MADS-box protein FBP24
TrEMBLA0A314L9610.0A0A314L961_NICAT; Protein transparent testa 16
STRINGXP_009785850.11e-177(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.21e-58MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]