PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02459g08001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 408aa MW: 45606.7 Da PI: 5.3193

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02459g08001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.5	8.9e-12	109	156	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+r + f+ L + +P + kKl+Ka+iLe ++YI +Lq Niben101Scf02459g08001.1 109 QDHLLAERKRRERFTQLFAVLAKSIPGL-----KKLDKASILEDSIKYIGELQ 156 668899********************.....9**************998 PP
2	HLH	12.1	0.00036	272	289	38	55
STCHHHHHHHHHHHHHHH CS HLH 38 lsKaeiLekAveYIksLq 55 l+Ka+iLe ++YI +Lq Niben101Scf02459g08001.1 272 LDKASILEDSIKYIGELQ 289 89*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.481	106	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-9	109	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.6E-14	110	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.27E-11	111	160	No hit	No description
SuperFamily	SSF47459	2.36E-14	111	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.8E-12	112	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-5	271	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MENASFNNLE NTAGDEEPFE FKNLLSEMFT SSSNQNPSSN SSLMEIPKIA FSSSPNSSTS 60 SSPNIISFGN QESNFVGDEI DYDMISEKVV IGLSSSPTKR ICRSPLQSQD HLLAERKRRE 120 RFTQLFAVLA KSIPGLKKLD KASILEDSIK YIGELQGRVR VLEEETGTTK SKNLIESNST 180 VQKQFPLAAT TSDDDNSFLP MNFDETKTDQ NDIKVQILDK NVLIGIHCSK EMRSIFTIIA 240 GIMEKLQLTI HHIRVTPSNH IALHYISVLA ELDKASILED SIKYIGELQG RVRVLEEETG 300 TTKSKNLIES NSTVQKQFPL AATTSDDDNS FLPMNFDETK TDQNDIKVQI LDKNVLIGIH 360 CSKEMRSIFT IIAGIMEKLQ LTIHHIRVTP SNHIALHYIS VLAEITVI

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MENASFNNLE NTAGDEEPFE FKNLLSEMFT SSSNQNPSSN SSLMEIPKIA FSSSPNSSTS  60
SSPNIISFGN QESNFVGDEI DYDMISEKVV IGLSSSPTKR ICRSPLQSQD HLLAERKRRE  120
RFTQLFAVLA KSIPGLKKLD KASILEDSIK YIGELQGRVR VLEEETGTTK SKNLIESNST  180
VQKQFPLAAT TSDDDNSFLP MNFDETKTDQ NDIKVQILDK NVLIGIHCSK EMRSIFTIIA  240
GIMEKLQLTI HHIRVTPSNH IALHYISVLA ELDKASILED SIKYIGELQG RVRVLEEETG  300
TTKSKNLIES NSTVQKQFPL AATTSDDDNS FLPMNFDETK TDQNDIKVQI LDKNVLIGIH  360
CSKEMRSIFT IIAGIMEKLQ LTIHHIRVTP SNHIALHYIS VLAEITVI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	119	ERKRRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016472309.1	1e-165	PREDICTED: transcription factor bHLH18-like
TrEMBL	A0A1S4A6S7	1e-163	A0A1S4A6S7_TOBAC; transcription factor bHLH18-like
STRING	XP_009623662.1	1e-150	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12598	11	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-21	bHLH family protein