PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02459g08005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 241aa    MW: 27314.9 Da    PI: 5.195
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02459g08005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.9e-1295142355
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               + h  +Er+RR+++ + f  L +++P +     kKl+K++iL  ++eY+k+Lq
  Niben101Scf02459g08005.1  95 QEHVTAERKRREKMGELFISLSKVVPGL-----KKLDKSSILGDTIEYMKKLQ 142
                               67999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.19392141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.8E-1095142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-1696154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-1696154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.97E-1197146No hitNo description
SMARTSM003531.9E-1398147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEYTGNFNNE DDFFLDVMQN FSQDIYSYSN IIEEKDLSSS PLKSSSGFLI SFSSSQEEEN  60
IAIVKSHLEE INACQAFEGN NNNNNMYKRT PLQAQEHVTA ERKRREKMGE LFISLSKVVP  120
GLKKLDKSSI LGDTIEYMKK LQQQVKILEE TKKNIPSAAC ENINDSSSSN NNVNCINQVL  180
GSKIKARILD KNVLINIHCN KQDGVVGRIL FEMEQLHLSV NDIRIMPFGR TNLEISVLAE  240
L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100105ERKRRE
2101106RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768662.11e-151PREDICTED: transcription factor bHLH18-like
RefseqXP_016472308.11e-151PREDICTED: transcription factor bHLH18-like
TrEMBLA0A1S4A6N71e-150A0A1S4A6N7_TOBAC; transcription factor bHLH18-like
TrEMBLA0A1U7VKZ01e-150A0A1U7VKZ0_NICSY; transcription factor bHLH18-like
STRINGXP_009768662.11e-151(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88641628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-27bHLH family protein