PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02461g02009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 249aa    MW: 28036.3 Da    PI: 7.3458
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02461g02009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS186.32.1e-571723468283
                      GRAS  68 etseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egpp.slRiTgvgsp 150
                               + + ++ +e+ +a++ +++++P++ f++++aN aI +a  g+e++HiiD+++ + +QW +L+++L+++p ++pp  +RiTg+ + 
  Niben101Scf02461g02009.1  17 QLAASSRAEKRQAYHWLHQITPYMAFGFMAANDAICKASRGKECLHIIDLGMLHIFQWQSLIRTLTAQPdSPPPrLVRITGILED 101
                               4555667888999********************************************************55555689*******6 PP

                      GRAS 151 esgskeelee.tgerLakfAe..elgvpfefnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklv 231
                               +++   ele  +++ + ++A+  + ++++ef+v+ +    + ++ e+L+v++gE+l+Vn+v+qlh+ ++es  + +   ++L+++
  Niben101Scf02461g02009.1 102 THD-FMELELgLKSLMDEVAAssSGNIRLEFQVIKEPvPASLFTREKLDVREGETLIVNSVMQLHKYVKESRGSLK---TILQAI 182
                               655.4444431556666666511569*******8444589999*************************88777666...9***** PP

                      GRAS 232 kslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                               k+l P +v+vveq+a+hn++ Fl rfle+l+yysa+fdslea+lp ++ +ri
  Niben101Scf02461g02009.1 183 KKLGPALVTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLPWDATTRI 234
                               *********************************************9988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.4461249IPR005202Transcription factor GRAS
PfamPF035147.2E-5517234IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MLLQHRNNAG ATLIEDQLAA SSRAEKRQAY HWLHQITPYM AFGFMAANDA ICKASRGKEC  60
LHIIDLGMLH IFQWQSLIRT LTAQPDSPPP RLVRITGILE DTHDFMELEL GLKSLMDEVA  120
ASSSGNIRLE FQVIKEPVPA SLFTREKLDV REGETLIVNS VMQLHKYVKE SRGSLKTILQ  180
AIKKLGPALV TVVEQDANHN GPFFLGRFLE SLHYYSAIFD SLEASLPWDA TTRIREVSLR  240
RGDSKHCGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-252922598280Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768414.11e-164PREDICTED: DELLA protein RGL1-like
RefseqXP_016464602.11e-164PREDICTED: DELLA protein RGL1-like
TrEMBLA0A1S3ZJT61e-162A0A1S3ZJT6_TOBAC; DELLA protein RGL1-like
TrEMBLA0A1U7W1A51e-162A0A1U7W1A5_NICSY; DELLA protein RGL1-like
STRINGXP_009768414.11e-163(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA140671113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-38RGA-like 1