PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02461g02010.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 72aa MW: 8047.38 Da PI: 9.9004

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02461g02010.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	59.4	7.4e-19	2	65	309	374
GRAS 309 hetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 he++ Wr++l++aGF+ v l+ ++qa+++l+ ++sdgy++ +e+g+l+lgWk+rp++++SaW+ Niben101Scf02461g02010.1 2 HERADLWRRQLGRAGFQVVGLK--CMSQARMMLSVYGSDGYTLASEKGCLLLGWKGRPIMFASAWE 65 89999************995..89*************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	2.6E-16	2	65	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 72 aa Download sequence Send to blast
MHERADLWRR QLGRAGFQVV GLKCMSQARM MLSVYGSDGY TLASEKGCLL LGWKGRPIMF 60 ASAWEVHNVA SS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009620744.1	2e-42	PREDICTED: DELLA protein RGL1-like
Refseq	XP_016508607.1	2e-42	PREDICTED: DELLA protein RGL1-like
TrEMBL	A0A1S4D5B6	4e-41	A0A1S4D5B6_TOBAC; DELLA protein RGL1-like
STRING	XP_009620744.1	7e-42	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	1e-16	RGA-like 1