PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02464g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 271aa    MW: 32200.8 Da    PI: 5.8105
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02464g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.29.4e-38221442128
                       NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr..atksgyWk 84 
                               p+G+rF Ptd elv +yLkkk++ ++l+  + i+e+ i++++P++L  + ++e k+wyfF+ r+++y++g+++nr  + k+gyWk
  Niben101Scf02464g00002.1  22 PKGYRFIPTDGELVEFYLKKKINCETLPR-NRIREICINQHHPQELC-NREQEGKSWYFFTARKRRYTNGRKPNRqvIDKKGYWK 104
                               89*************************99.77**************7.4466789********************633569**** PP

                       NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               atg d ev+  +g+ vg k tL fy   +++g+k++W mheyrl
  Niben101Scf02464g00002.1 105 ATGVDSEVTY-NGQIVGYKMTLDFY---EQNGVKSQWKMHEYRL 144
                               **********.999***********...7999**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-4120172IPR003441NAC domain
PROSITE profilePS5100540.93221173IPR003441NAC domain
PfamPF023652.7E-2222144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEINRENYNQ ILSDEQYLDT IPKGYRFIPT DGELVEFYLK KKINCETLPR NRIREICINQ  60
HHPQELCNRE QEGKSWYFFT ARKRRYTNGR KPNRQVIDKK GYWKATGVDS EVTYNGQIVG  120
YKMTLDFYEQ NGVKSQWKMH EYRLDRKSPL PDANTSTENQ ELDKYVLCEI YINTYKAKNV  180
NKRRKRENDS EDLPTDDDES MNSPNNYNII QDTDSTELSS YGSILSNINM YPYEANMEHD  240
KFSSFKNNAE FGNQFIQEIT PNFLASRLPE F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-312117115166Stress-induced transcription factor NAC1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775469.11e-166PREDICTED: NAC domain-containing protein 67-like
RefseqXP_016507092.11e-166PREDICTED: NAC domain-containing protein 67-like
TrEMBLA0A1S4D0Z71e-165A0A1S4D0Z7_TOBAC; NAC domain-containing protein 67-like
TrEMBLA0A1U7WLC91e-165A0A1U7WLC9_NICSY; NAC domain-containing protein 67-like
STRINGXP_009775469.11e-166(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1533968
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.14e-34NAC domain containing protein 25