PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02482g02005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 836aa    MW: 92521.1 Da    PI: 6.2991
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02482g02005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.62.7e-19324423198
                               EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvv 81 
                               f+kvl+ sd+++ grlvlpk +ae++   +++ e+  ++++d +g++W++++++  +++s++yvl+ G     +  +L++gD+v+
  Niben101Scf02482g02005.1 324 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSEGLPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVI 407
                               99**************************666667778***************9989999999***9.****************** PP

                               EEE-SSSEE..EEEEE- CS
                        B3  82 Fkldgrsefelvvkvfr 98 
                               F++++  +++lv+++++
  Niben101Scf02482g02005.1 408 FSRID-PGGKLVMGFRK 423
                               **887.78878888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-30321429IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-21321425IPR015300DNA-binding pseudobarrel domain
CDDcd100174.06E-24322423No hitNo description
PROSITE profilePS5086311.321324425IPR003340B3 DNA binding domain
SMARTSM010191.7E-21324424IPR003340B3 DNA binding domain
PfamPF023622.2E-16324423IPR003340B3 DNA binding domain
PROSITE profilePS5105014.107548598IPR011124Zinc finger, CW-type
PfamPF074962.9E-11553595IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
MGSMICMNEL CRATTSSEWK KGWSLKSGGF AKLCYNCGSA FENLVFCETF HSEESGWREC  60
KTCRKLIHCG CIASKYLYEY MDYGGVACIN CASQLNGHSI RPIQIPGDDL PNGTLGTKAT  120
QPLGVENKMD ENNFDKRMVM RLSKPVETSE SGQLFQTQKN DIKQETMLPI GNVSTCFSNL  180
NQQPIGAASL FGKPDNDRQS QGVKDMYESI NQPSLNFSLS TLVGASSSAQ PFPGGDVEGR  240
EQSKSSPFQL GQRTRHILPK PPKPSPNSGS ESNNAMTSQT RVARPPAEGR AGRNQLLPRY  300
WPRITDQELQ QISGDLKSTI VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPINQSEGLP  360
IRIQDIKGKE WTFQFRFWPN NNSRMYVLEG VTPCIQNMQL QAGDTVIFSR IDPGGKLVMG  420
FRKATNNADM QDPQPSILPN GSGFAETSFT GLTENLPNGG RTSDDSVNRQ VPISEKKKAR  480
NIGSKNKRLL MHADDVMELR ITWEEAQELL RPPPTSKPTV VVIEDYEFEE YEEPPVFGKR  540
TIFTARSSGD QEQWAQCDSC SKWRRLPVHV LLPAKWTCSD NIWDSRRCSC AAPDEINPRE  600
LEALFRVGKD LKRRKLVENN EDCEPSGLDA LATLAVLGDN IGDLGEPSVG ATTKHPRHRP  660
GCSCIVCIQP PSGKGKHQPT CKCNVCLTVK RRFKTLMLRK KKKQSEREAE LAQAKDQVPP  720
KDGSETEGAS GTDQLLHMNQ SENEHMNLSE NERDTNGDQT EEFGAGKGQL DLNSHPNRDD  780
DMLVEATAGM TMTSLNGLES LGDSLLSQAA GESERNHPDH GFMKTADAEQ ENKGDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-713024312131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1608614KDLKRRK
2689700KRRFKTLMLRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772834.10.0PREDICTED: B3 domain-containing transcription repressor VAL1-like
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A1U7WDV90.0A0A1U7WDV9_NICSY; B3 domain-containing transcription repressor VAL1-like
STRINGXP_009772834.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]