PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02486g03001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 120aa MW: 14076.8 Da PI: 9.8078

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02486g03001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	30	1.7e-09	54	108	2	57
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtrae 57 Yn+YA GF+vrk + + rn+e+t+ f Cs egk+++ ++ +e++r++r+ Niben101Scf02486g03001.1 54 AYNSYAVAKGFDVRKGPRTVN-RNKEMTRCLFLCSGEGKSDKLSHFQERKRQRREL 108 5*************97777.8888**************99997777777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-6	54	108	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
METTTVPTTP VSYQDHNSND EKNAPMIHNV YHIDKNFAFK IGMKFGFEEE SYNAYNSYAV 60 AKGFDVRKGP RTVNRNKEMT RCLFLCSGEG KSDKLSHFQE RKRQRRELET FHTIRSKAYK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019266793.1	1e-33	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A1J6JS56	7e-45	A0A1J6JS56_NICAT; Protein far1-related sequence 5
STRING	XP_009628526.1	3e-31	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1726	9	31