PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02509g06003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 324aa MW: 36815.4 Da PI: 8.165

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02509g06003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2e-05	160	179	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r nL+ H+ Niben101Scf02509g06003.1 160 FSCHLCYKTFNRYNNLQMHM 179 89*****************9 PP
2	zf-C2H2	15.8	4.1e-05	244	266	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ Niben101Scf02509g06003.1 244 FMCRKCGKPFAVKGDWRTHEKNC 266 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.68E-5	153	182	No hit	No description
PROSITE profile	PS50157	10.18	160	187	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	162	182	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.53E-6	228	264	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.7E-5	240	264	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MTEPYYNFFT GWFNFLPIHQ QYLSSPNFCY NNSNNNNFQE EVSLAPPPSP PLKEALPLLK 60 NVDKLDKTNT TKYSYESTTS SVAEEDNYSN ENVSVSLHIG LPISPSSDLT SSRVSFSSEG 120 LVIDENVGGN KEFDVPLSRL NKGQYWIPTP SQILIGPTQF SCHLCYKTFN RYNNLQMHMW 180 GHGSQYRKGP ESLRGTQPSA MLRLPCYCCA TDCKHNIDHP RARPLKDFRT LQTHYKRKHG 240 VKPFMCRKCG KPFAVKGDWR THEKNCGKIW YCICGSDFKH KRSLKDHIKS FGRGHGAVGI 300 PNIEELEDES TSEIEQDVGS SSPV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019267064.1	0.0	PREDICTED: zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-121	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A314KZL9	0.0	A0A314KZL9_NICAT; Zinc finger protein wip2
STRING	XP_009763748.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA462	24	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-113	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]