PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02510g02007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 511aa MW: 56790.5 Da PI: 6.8336

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02510g02007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.1	2.4e-10	207	247	4	41
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 k rr+++NReAAr+sR+RKka++++Le+ + ++Le+e Niben101Scf02510g02007.1 207 AKTLRRLAQNREAARKSRLRKKAYVQQLETsriRLAQLEQE 247 6889************************9733355555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.0E-7	204	281	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.0E-8	206	252	No hit	No description
PROSITE profile	PS50217	9.163	206	250	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.9E-7	207	247	IPR004827	Basic-leucine zipper domain
CDD	cd14708	2.37E-20	208	258	No hit	No description
SuperFamily	SSF57959	2.17E-6	208	250	No hit	No description
PROSITE pattern	PS00036	0	211	226	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.2E-31	289	364	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence Send to blast
MESQRIGDSV SLSAESGPSH HHHNMSYALF RGLNPPNTSF MCHSTPNNQE QPAFDFGALE 60 EAIVLQGVKM SDDEAAKASL YAATNRPAAT LEMFPSWPTR FHHTHTPRGS SKSGGEESSE 120 SGSALNTYSS RGEPHLEPES PISGKPSSGY QSLEQNQQQQ LQPPQQQLQE MASDSPRTGV 180 SHTEPASKSN YEKRKGVGST SDRVVDAKTL RRLAQNREAA RKSRLRKKAY VQQLETSRIR 240 LAQLEQELQR ARSQGLFMGG GAAAGANISS GAAMFDMEYS RWLDDDQRHI SELRTALQAH 300 LGDGDLRIIV DGYIAHYDEI FQLKGVAAKS DIFHLITGMW TTPAERCFLW MGGFRPSELI 360 KMLIAQLDPL TQQQVVGIYS LQQSSQQAEE ALSQGLEQLQ QSLIETLANA SLNDGMRHMA 420 LALGKLANLE GFVRQADNLR QQTLHQLHRI LTVRQAARCF LVIGEYYDRL RALSSLWASR 480 PREAMLGDDN SCQTTTELQM IQASQHHFSN M

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence Send to blast

MESQRIGDSV SLSAESGPSH HHHNMSYALF RGLNPPNTSF MCHSTPNNQE QPAFDFGALE  60
EAIVLQGVKM SDDEAAKASL YAATNRPAAT LEMFPSWPTR FHHTHTPRGS SKSGGEESSE  120
SGSALNTYSS RGEPHLEPES PISGKPSSGY QSLEQNQQQQ LQPPQQQLQE MASDSPRTGV  180
SHTEPASKSN YEKRKGVGST SDRVVDAKTL RRLAQNREAA RKSRLRKKAY VQQLETSRIR  240
LAQLEQELQR ARSQGLFMGG GAAAGANISS GAAMFDMEYS RWLDDDQRHI SELRTALQAH  300
LGDGDLRIIV DGYIAHYDEI FQLKGVAAKS DIFHLITGMW TTPAERCFLW MGGFRPSELI  360
KMLIAQLDPL TQQQVVGIYS LQQSSQQAEE ALSQGLEQLQ QSLIETLANA SLNDGMRHMA  420
LALGKLANLE GFVRQADNLR QQTLHQLHRI LTVRQAARCF LVIGEYYDRL RALSSLWASR  480
PREAMLGDDN SCQTTTELQM IQASQHHFSN M

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016485811.1	0.0	PREDICTED: transcription factor TGA2-like isoform X2
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1S4BA75	0.0	A0A1S4BA75_TOBAC; transcription factor TGA2-like isoform X2
STRING	XP_009772593.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3683	23	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-175	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]