PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02510g05023.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YB
Protein Properties Length: 198aa    MW: 22068.2 Da    PI: 4.3886
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02510g05023.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB40.28.3e-1324120596
                     NF-YB   5 drflPianvsrimkkvlP...anakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 
                               ++ lP + v r++k  l    +++ is  +d+     e +  fi ++++ a+d c++ kr+tin++d++ al ++ f +++e+l+
  Niben101Scf02510g05023.1  24 QESLPKTIVRRLVKDKLSqlsTDTDISllRDSLLAFSESARIFIHYLSATANDICKESKRQTINAEDVFKALEEIEFPEFIETLR 108
                               5678888899999876541115666764467888889************************************************ PP

                     NF-YB  85 vylkkyrelege 96 
                               + l+ +r+ +++
  Niben101Scf02510g05023.1 109 ASLEVFRKRNSK 120
                               ******987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.3E-2817157IPR009072Histone-fold
SuperFamilySSF471132.86E-2225134IPR009072Histone-fold
PfamPF008082.7E-82695IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MAEIEKQKDK EKAAAAGEGV QIEQESLPKT IVRRLVKDKL SQLSTDTDIS LLRDSLLAFS  60
ESARIFIHYL SATANDICKE SKRQTINAED VFKALEEIEF PEFIETLRAS LEVFRKRNSK  120
RKSGSSKSTE SNKKAKLKEP VENGKGKMKE QPSDTENEDG LAGEQPSDNE NEDGQAAEQP  180
FDNENEDVQA EGEDSGDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y26_A3e-11181379125DNA polymerase epsilon subunit D
5y27_A3e-11181379125DNA polymerase epsilon subunit D
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781709.11e-107PREDICTED: DNA polymerase epsilon subunit 3
RefseqXP_016488182.11e-107PREDICTED: DNA polymerase epsilon subunit 3-like
TrEMBLA0A1S4BH591e-106A0A1S4BH59_TOBAC; DNA polymerase epsilon subunit 3-like
TrEMBLA0A1U7X4B01e-106A0A1U7X4B0_NICSY; DNA polymerase epsilon subunit 3
STRINGXP_009781709.11e-106(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101612427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.18e-38nuclear factor Y, subunit B11