PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02538g04007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YC

Protein Properties

Length: 297aa MW: 33970.6 Da PI: 5.4745

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02538g04007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	110.8	7.5e-35	49	150	2	99
NF-YC 2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaa 82 l fw++q i +a+++k ++elPlari++++k++++vkm+sa++ vl++ka e+fileltlr+w++ae+ krrtlk+ dia a Niben101Scf02538g04007.1 49 LLCFWKQQvdeILQASELKrKQELPLARIRRVIKSNDQVKMVSAHSIVLFAKATEMFILELTLRAWMQAEQVKRRTLKRYDIARA 133 567**9555557889996789********************************************************** PP NF-YC 83 vtrtdifdflvdivprd 99 + + + dfl divp + Niben101Scf02538g04007.1 134 IRNEELLDFLCDIVPLQ 150 ************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	7.21E-22	69	149	IPR009072	Histone-fold
Pfam	PF00808	2.5E-14	70	134	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	6.0E-28	72	148	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MEFPKSSSDL SSEMQKLVGI DSCLPSNNKT QQDEDKREPC FMHLLRAKLL CFWKQQVDEI 60 LQASELKRKQ ELPLARIRRV IKSNDQVKMV SAHSIVLFAK ATEMFILELT LRAWMQAEQV 120 KRRTLKRYDI ARAIRNEELL DFLCDIVPLQ SYKYQFRVEE EANDGQGNEF HPSYEMLQLQ 180 PSNIPFKVLK SHYLQYQFQV EEEELDVQGN EFHQAYQMVH SNNIPGDRKE SGGSDGSPFF 240 PASKAVVVSE SKKKEQTASF TSIQGIPAPL MLPPAINSSA EADFTSDGFA LDNKEGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_C	8e-26	46	148	16	118	HapE
4g92_C	8e-26	46	148	16	118	HapE
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783743.1	1e-165	PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X8
Refseq	XP_018624677.1	1e-165	PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X14
Refseq	XP_018624678.1	1e-165	PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X15
TrEMBL	A0A1U7WYQ7	1e-164	A0A1U7WYQ7_NICSY; nuclear transcription factor Y subunit gamma-like isoform X8
STRING	XP_009783727.1	1e-164	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13918	11	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	2e-31	nuclear factor Y, subunit C4