PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02541g09006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 351aa    MW: 40184.6 Da    PI: 6.6691
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02541g09006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.2e-181360148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg W++eEde+lv+ ++ +G g+W+++++  g+ R++k+c++rw +yl
  Niben101Scf02541g09006.1 13 RGLWSPEEDEKLVKHITSHGHGCWSSVPKLSGLQRCGKSCRLRWINYL 60
                              788*******************************************97 PP
2Myb_DNA-binding51.91.7e-1666109146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               rg++T++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Niben101Scf02541g09006.1  66 RGSFTEQEERTIIDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 109
                               89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-25462IPR009057Homeodomain-like
PROSITE profilePS5129418.53860IPR017930Myb domain
SuperFamilySSF466899.36E-2910107IPR009057Homeodomain-like
SMARTSM007178.4E-131262IPR001005SANT/Myb domain
PfamPF002491.3E-141360IPR001005SANT/Myb domain
CDDcd001677.21E-111660No hitNo description
PROSITE profilePS5129425.92761115IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-2563116IPR009057Homeodomain-like
SMARTSM007174.2E-1565113IPR001005SANT/Myb domain
PfamPF002493.2E-1566109IPR001005SANT/Myb domain
CDDcd001674.67E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLVKHITS HGHGCWSSVP KLSGLQRCGK SCRLRWINYL  60
RPDLRRGSFT EQEERTIIDV HRILGNKWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPNTHNLLIK NKTNNSTKAK THHHQDSTSV FTFDTSTNKE VISMDYIKST LASFSPFPHS  180
NNTTTSSTYN YSPIVPNIEY QNPTFTWSDQ RNQTVATMSQ SQTSDRNHVI TQNSMLDFAS  240
SSLMESSTNI RQGETEYINE NSMWHGTGIE PTTLNPANGT EELMQVQQEE QFPIQTKFCD  300
QEDVYRVINH DQTVENTFDS SNFDFDFVDT TLVPCGLYTS VNSMDQISWD C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29131157108B-MYB
1h8a_C4e-291311527128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783085.10.0PREDICTED: transcription factor MYB46-like
RefseqXP_016472474.10.0PREDICTED: transcription factor MYB46-like
TrEMBLA0A1S4A7A40.0A0A1S4A7A4_TOBAC; transcription factor MYB46-like
TrEMBLA0A1U7X9G20.0A0A1U7X9G2_NICSY; transcription factor MYB46-like
STRINGXP_009783085.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-82myb domain protein 67