PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02543g01002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 177aa    MW: 20161.9 Da    PI: 9.3399
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02543g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.89.1e-111663249
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                              +ie k     tfskRr+g+ KK +EL   C++++ ++  s+tgk + y
  Niben101Scf02543g01002.1 16 KIEKKDDLFATFSKRRAGLYKKSSELIAECGVDIGIVASSPTGKPFSY 63
                              6777777789*********************************96665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.712767IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-14766IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-19877IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-10929IPR002100Transcription factor, MADS-box
PfamPF003199.3E-171663IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-102944IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-104465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MVSKKTKGRQ KIEMKKIEKK DDLFATFSKR RAGLYKKSSE LIAECGVDIG IVASSPTGKP  60
FSYFHPTDDA VIARFQNPDM QLSQSIGLVA AHARNKVNSL NTRLDELDTR EEATIAQSRF  120
YDKIIETRQS GWWESIDQLN ADEVIKFEAW LKSVIFNMNY RLNQLEIGAS SSTPNYF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019263307.11e-119PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1J6ITL41e-117A0A1J6ITL4_NICAT; Agamous-like mads-box protein agl62
STRINGXP_009616563.13e-98(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.14e-20AGAMOUS-like 29