PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02563g01008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 191aa    MW: 22430.3 Da    PI: 6.1541
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02563g01008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.3e-194497457
                              -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                  Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                              ++++++eq++ Le+ Fe ++++ +e++ +LA++lgL+  qV+vWFqN+Ra++k+
  Niben101Scf02563g01008.1 44 KRKLSEEQVNLLEQSFEDEHKLETERKDKLASELGLDPHQVSVWFQNKRARYKN 97
                              45899***********************************************95 PP
2HD-ZIP_I/II110.61.1e-3543129288
               HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                               +kr+ls+eqv+lLE+sFe e+kLe+erK +la+eLgl+p+qv vWFqn+RAR+k+k+lE++y++Lk+++d+   e++rLe+e ++
  Niben101Scf02563g01008.1  43 RKRKLSEEQVNLLEQSFEDEHKLETERKDKLASELGLDPHQVSVWFQNKRARYKNKKLEEEYSRLKTEHDTAIVEKCRLENEIQK 127
                               8***********************************************************************************9 PP

               HD-ZIP_I/II  87 Lr 88 
                               L 
  Niben101Scf02563g01008.1 128 LL 129
                               96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.8763898IPR001356Homeobox domain
SMARTSM003891.2E-1741102IPR001356Homeobox domain
CDDcd000861.39E-154399No hitNo description
SuperFamilySSF466893.67E-1743107IPR009057Homeodomain-like
PfamPF000464.6E-164497IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-1945105IPR009057Homeodomain-like
PRINTSPR000311.6E-56978IPR000047Helix-turn-helix motif
PROSITE patternPS0002707396IPR017970Homeobox, conserved site
PRINTSPR000311.6E-57894IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MVLISQYYPD IYTQLISEPG EAKRRRRRKK NKGEGSSNSG VMRKRKLSEE QVNLLEQSFE  60
DEHKLETERK DKLASELGLD PHQVSVWFQN KRARYKNKKL EEEYSRLKTE HDTAIVEKCR  120
LENEIQKLLL ERNCDGVSSN SPISTSSLTM DQQPFLGEFG MEGMLMDNLF FVSENTYNYH  180
EGLEWVNPIY I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12227KRRRRR
22329RRRRRKK
32745RKKNKGEGSSNSGVMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605338.11e-113PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotO232081e-58ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A1S4DI661e-111A0A1S4DI66_TOBAC; homeobox-leucine zipper protein ATHB-40-like
STRINGXP_009605338.11e-112(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-54homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]