PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02583g05003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 274aa    MW: 31168.8 Da    PI: 8.4977
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02583g05003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000145274123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              y+C+ C + F++   L  H+++H
  Niben101Scf02583g05003.1 52 YTCSFCRREFRSAQALGGHMNVH 74
                              9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.05E-64979No hitNo description
SMARTSM003550.00615274IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2195279IPR007087Zinc finger, C2H2
PfamPF139121.7E-55275IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEQVRYWMSA KRKHDTTLSS HPSSYGDSWE EQAFAEDAAG ALGGCIWPPR SYTCSFCRRE  60
FRSAQALGGH MNVHRRDRAR MKQSPPSNIP SGDHQNQVFI PPHHNNSHVQ YPSHQICTFM  120
YNPNSDTDHG VLRSPNSDPL PIRVSSQKTL ATHSSFSSIV QESNKNKFSS PPSWSNLVAG  180
SCLSNVKVHE EKKLKSIDFK KEERNLEAID PNSRAKLDHV AITNCKRRRV DEENNTPFAN  240
LFPKTNSMER CRLQSEALER IPSAIEELDL ELRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-134774229superman protein
2l1o_A3e-134774229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225229KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019251598.10.0PREDICTED: zinc finger protein 1-like
TrEMBLA0A1J6J1F90.0A0A1J6J1F9_NICAT; Putative transcriptional regulator rabbit ears
STRINGXP_009786110.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.13e-28zinc-finger protein 10