PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02585g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 184aa MW: 20409.7 Da PI: 7.4203

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02585g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.2	2.1e-41	11	110	1	99
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +CaaCk+lrrkC ++ C++apyfp e+p kfanvhk+FGasnv+kll+++++++reda++sl+yeAea ++dPvyG+vg i+ lq Niben101Scf02585g00001.1 11 PCAACKFLRRKCLPGnCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEIQPHQREDAVNSLAYEAEAHIKDPVYGCVGAISVLQ 95 7*********8855***************************************************************** PP DUF260 85 qqleqlkaelallke 99 +q+ +l++el+++++ Niben101Scf02585g00001.1 96 RQVIRLQKELDATNA 110 ********99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.661	10	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.8E-41	11	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MASSSSYSNP PCAACKFLRR KCLPGNCIFA PYFPPEEPTK FANVHKIFGA SNVSKLLNEI 60 QPHQREDAVN SLAYEAEAHI KDPVYGCVGA ISVLQRQVIR LQKELDATNA DLMRYINLSG 120 GSMNNQMVNQ QRSNLNYGRR IDGTTTGSDQ NYVFCVPSYN SHNTWNSNTI SGNHNPEADN 180 DSSM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-63	2	115	2	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-63	2	115	2	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019227086.1	1e-127	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_019227087.1	1e-127	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_019227088.1	1e-127	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_019227089.1	1e-127	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_019227090.1	1e-127	PREDICTED: LOB domain-containing protein 25-like
Swissprot	Q8L8Q3	5e-67	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A314KSB5	1e-126	A0A314KSB5_NICAT; Lob domain-containing protein 25
STRING	XP_009597524.1	1e-115	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	2e-69	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]