PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02594g10016.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family DBB
Protein Properties Length: 298aa    MW: 32769.8 Da    PI: 8.2196
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02594g10016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.61.1e-07442537
                  zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                               C+ ++++e+++fC+ ++  lCe C    H+       H
  Niben101Scf02594g10016.1  4 QCDVCNKNEASIFCTADEAALCEACDHRVHHVnklaskH 42
                              7*************************9997323555555 PP
2zf-B_box31.92.6e-105692438
                  zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                              + C+ ++e +++lfC++++  lC +C l++Hk   Ht
  Niben101Scf02594g10016.1 56 PLCDICQERRAILFCQQDRAILCGECDLSIHKAneHT 92
                              78*****************************888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.092147IPR000315B-box-type zinc finger
CDDcd000213.87E-7347No hitNo description
PfamPF006439.3E-6443IPR000315B-box-type zinc finger
SMARTSM003364.8E-7447IPR000315B-box-type zinc finger
PROSITE profilePS5011910.16853100IPR000315B-box-type zinc finger
SMARTSM003367.6E-1553100IPR000315B-box-type zinc finger
PfamPF006432.4E-85693IPR000315B-box-type zinc finger
CDDcd000213.79E-105692No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MKIQCDVCNK NEASIFCTAD EAALCEACDH RVHHVNKLAS KHQRFSLLQP SNKQFPLCDI  60
CQERRAILFC QQDRAILCGE CDLSIHKANE HTKKHNRYLL TGIKLSSNSA LYSSTLSPSA  120
ASSANSSASN FKSQNQTNNP AAASVSSTIT GTKTAAVEAV KVVKEKVGGC NSQLVNVGGN  180
NLTSSISEYL EMLPGWHIDD EDILSFWDTD LESHMSSFPP QNIGVWVPQA PPPLQSKQQA  240
QTQFLSPSNL NFAGKIGIKD SREVNSIKSS RKWRDDNSFA VPQISPPSTS FKRSRTLW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009612483.10.0PREDICTED: B-box zinc finger protein 21-like isoform X1
RefseqXP_016514113.10.0PREDICTED: B-box zinc finger protein 21-like
RefseqXP_019224378.10.0PREDICTED: B-box zinc finger protein 21-like isoform X2
TrEMBLA0A1S4DL461e-179A0A1S4DL46_TOBAC; B-box zinc finger protein 21-like
TrEMBLA0A314KV871e-179A0A314KV87_NICAT; B-box zinc finger protein 21
STRINGXP_009612483.11e-180(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14632364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.11e-69salt tolerance homolog2