PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02647g03011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SAP
Protein Properties Length: 447aa    MW: 50064.4 Da    PI: 6.5063
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02647g03011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP719.33.7e-21954475455
                       SAP   5 sssssseseegseggeggdassgesegpsssrqraanevwpePflealatqvaidasrslGrlaaasalanvfqvcstwravsrs 89 
                               ss            ++ g+a++g   ++s+sr+ra n+vwpePf+e la  va+dasrs+Grlaaa+al  +fqvcstw+avs s
  Niben101Scf02647g03011.1   5 SS----------PPSSLGGAGGGGEPSSSRSRRRAGNDVWPEPFVEDLALLVATDASRSIGRLAAAQALSVIFQVCSTWQAVSHS 79 
                               22..........1222223333445578999****************************************************** PP

                       SAP  90 dllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvded....ndadalsCrclalsdkylaaGfadG 170
                               dllwq+ltrriW+r +llr+tWree+iy+h+ta+nf + ry+y tl+f pa++d+d    n++d+l Cr+lalsd++laaGf+dG
  Niben101Scf02647g03011.1  80 DLLWQNLTRRIWNRHYLLRQTWREEFIYWHQTANNFLHHRYTYNTLHFVPANNDNDdnnnNNIDSLFCRRLALSDHHLAAGFSDG 164
                               **************************************************987654222156789******************** PP

                       SAP 171 avrlfdletrlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgr 255
                               +v+lf l trlh+stf+p+hrdrlGrfsravsGi++sd +lvfa+ldGdihv vi    aa++rra+lGdvvndGalvdf+G+++
  Niben101Scf02647g03011.1 165 SVQLFYLPTRLHLSTFHPHHRDRLGRFSRAVSGIILSDVQLVFASLDGDIHVVVIGD--AAPPRRAHLGDVVNDGALVDFTGCDQ 247
                               *******************************************************98..78************************ PP

                       SAP 256 WwvGlyaGvpGrafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreee 340
                               WwvGlyaGvpGrafhiW+ eteel fvGG ltdPea+mGWh+lte+telvGr+rvt retavaCtsl+++v+dl+nqg+++r + 
  Niben101Scf02647g03011.1 248 WWVGLYAGVPGRAFHIWNKETEELLFVGGELTDPEALMGWHLLTEVTELVGRIRVTTRETAVACTSLQIMVIDLQNQGIIIRAQP 332
                               ************************************************************************************* PP

                       SAP 341 errGlivssldasneayvvvdsrGvatvrrvenleevcrfrvrg.aqrgvlgCvnggyalvyaggvlrvWeiekkegylyslrer 424
                               +rrGliv+s+d+ ne++v+vd+rG+a+vr  ++lee+crf+vrg  qrg++gC+nggyal+++g ++rvWei++ + ylys+rer
  Niben101Scf02647g03011.1 333 FRRGLIVASFDSRNETLVAVDNRGMASVRWTDDLEEICRFNVRGaNQRGIVGCMNGGYALMWIGNLIRVWEIQHGA-YLYSIRER 416
                               ********************************************99**************************9976.******** PP

                       SAP 425 vgevnalvaddrhvavsssdgtihlldfgaq 455
                               +g++na++ad+r+va++ssd+tih +dfgaq
  Niben101Scf02647g03011.1 417 IGDINAIIADERYVAACSSDATIHFWDFGAQ 447
                               *****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.1280.501.8E-560116No hitNo description
SuperFamilySSF813833.01E-564110IPR001810F-box domain
SuperFamilySSF509983.18E-13110445IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
Gene3DG3DSA:2.130.10.103.1E-11153232IPR015943WD40/YVTN repeat-like-containing domain
Gene3DG3DSA:2.130.10.103.1E-11395444IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS502949.177399447IPR017986WD40-repeat-containing domain
PROSITE patternPS006780430444IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MSSSSSPPSS LGGAGGGGEP SSSRSRRRAG NDVWPEPFVE DLALLVATDA SRSIGRLAAA  60
QALSVIFQVC STWQAVSHSD LLWQNLTRRI WNRHYLLRQT WREEFIYWHQ TANNFLHHRY  120
TYNTLHFVPA NNDNDDNNNN NIDSLFCRRL ALSDHHLAAG FSDGSVQLFY LPTRLHLSTF  180
HPHHRDRLGR FSRAVSGIIL SDVQLVFASL DGDIHVVVIG DAAPPRRAHL GDVVNDGALV  240
DFTGCDQWWV GLYAGVPGRA FHIWNKETEE LLFVGGELTD PEALMGWHLL TEVTELVGRI  300
RVTTRETAVA CTSLQIMVID LQNQGIIIRA QPFRRGLIVA SFDSRNETLV AVDNRGMASV  360
RWTDDLEEIC RFNVRGANQR GIVGCMNGGY ALMWIGNLIR VWEIQHGAYL YSIRERIGDI  420
NAIIADERYV AACSSDATIH FWDFGAQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244733.10.0PREDICTED: transcriptional regulator STERILE APETALA-like
SwissprotQ9FKH11e-169SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLA0A1J6J4Z50.0A0A1J6J4Z5_NICAT; Transcriptional regulator sterile apetala
STRINGXP_009596786.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40992345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.11e-165SAP family protein
Publications ? help Back to Top
  1. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]