PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02648g02004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 212aa    MW: 24640.5 Da    PI: 7.9647
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02648g02004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32e-092568344
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                              +WT  Ed+l+ +a  ++  +   +W++Ia++++ g+t++++  ++
  Niben101Scf02648g02004.1 25 PWTRFEDKLFEQALVMYSENdveRWHKIASRIP-GKTAEDVMAHY 68
                              8********************************.********998 PP
2Myb_DNA-binding44.43.9e-14121165347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +WT+eE+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  Niben101Scf02648g02004.1 121 PWTEEEHRLFLIGLDKYGKGDWRSISRNVVVTRTPTQVASHAQKY 165
                               8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.772175IPR017884SANT domain
SMARTSM007174.4E-82274IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-62472IPR009057Homeodomain-like
CDDcd001673.35E-82568No hitNo description
SuperFamilySSF466898.97E-122578IPR009057Homeodomain-like
PfamPF002491.6E-72568IPR001005SANT/Myb domain
PROSITE profilePS5129421.268114170IPR017930Myb domain
SuperFamilySSF466893.93E-17116171IPR009057Homeodomain-like
TIGRFAMsTIGR015577.2E-17117169IPR006447Myb domain, plants
SMARTSM007177.3E-11118168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-11118164IPR009057Homeodomain-like
PfamPF002494.3E-12121165IPR001005SANT/Myb domain
CDDcd001673.36E-9121165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MMYTTNNRWM IGSDSRAAMI HSNSPWTRFE DKLFEQALVM YSENDVERWH KIASRIPGKT  60
AEDVMAHYDA LVHDVFEIDS GRVDPPSYPD DSFDWESDSK TSRISFGSNK KHEVERKKGT  120
PWTEEEHRLF LIGLDKYGKG DWRSISRNVV VTRTPTQVAS HAQKYYLRQQ SMKKERKRSS  180
IHDITTAVDT KTVPPQNSLQ SQGGYQNFDF PM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1317103288RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019263059.11e-153PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN68e-58SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A314L9221e-151A0A314L922_NICAT; Transcription factor myb1r1
STRINGXP_009796939.11e-152(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45472241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-72MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]