PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02658g03021.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 236aa    MW: 26911.6 Da    PI: 8.0587
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02658g03021.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28e-181461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEde+l+ ++k +G g+W++ ++  g+ R++k+c++rw +yl
  Niben101Scf02658g03021.1 14 KGAWTKEEDERLIAYIKTHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                              79******************************99************97 PP
2Myb_DNA-binding22.13.6e-076794129
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                              rg++T+eEdel+++++ +lG++  k+ +r
  Niben101Scf02658g03021.1 67 RGNFTEEEDELIIKLHSLLGNK-RKLLSR 94
                              89*******************9.777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-24564IPR009057Homeodomain-like
PROSITE profilePS5129423.313965IPR017930Myb domain
SMARTSM007173.2E-141363IPR001005SANT/Myb domain
PfamPF002491.0E-151461IPR001005SANT/Myb domain
SuperFamilySSF466895.5E-231589IPR009057Homeodomain-like
CDDcd001671.87E-111661No hitNo description
PROSITE profilePS500905.00662102IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.0E-106588IPR009057Homeodomain-like
SMARTSM007175466155IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDERLIAYIK THGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIK LHSLLGNKRK LLSRGIDPTT HRLMGEPTGT QKMTTISFAA  120
DDQEQKIKIS PEFETMNKEE KDHEIQERCP DLNLELRISP PHNQQNQLDH HQRANFLCFT  180
CSLGIQNSKD CSCSSKNSNG NGCSNIINMN MNISGYDFLG LKNNGLVLDY RTLETK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-16138826100MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764613.11e-160PREDICTED: myb-related protein 308-like
RefseqXP_016468960.11e-160PREDICTED: myb-related protein 308-like
SwissprotP813932e-92MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A1S3ZWZ41e-159A0A1S3ZWZ4_TOBAC; myb-related protein 308-like
TrEMBLA0A1U7VE241e-159A0A1U7VE24_NICSY; myb-related protein 308-like
STRINGXP_009764613.11e-159(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.18e-78myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]