PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02730g00016.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 99aa MW: 11590.4 Da PI: 8.5956

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02730g00016.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	14	37	2	23
EETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt..H 23 kC C + F+ k++L+ H+r H Niben101Scf02730g00016.1 14 KCAACYRQFNKKEHLVEHMRIsyH 37 6999****************8666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	11.51	13	42	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	5.2E-4	14	34	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.79E-5	14	61	No hit	No description
PROSITE pattern	PS00028	0	15	37	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence Send to blast
MDHRYESSDT LRNKCAACYR QFNKKEHLVE HMRISYHSVH EPMCGVCRKH CRSFESLREH 60 LIGPLPKAEC ERIFKERGCD ICLTILGFAV SHGKFGHSR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019237478.1	2e-57	PREDICTED: RNA exonuclease 4
TrEMBL	A0A1J6KHV2	4e-56	A0A1J6KHV2_NICAT; Small rna degrading nuclease 1
STRING	XP_009758098.1	1e-56	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4327	2	3