PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02730g01028.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 242aa    MW: 27002.1 Da    PI: 5.0499
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02730g01028.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.52.3e-1345742756
                              HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox 27 aeereeLAkklgLterqVkvWFqNrRakek 56
                               e++++LAkklgL+ rqV vWFqNrRa++k
  Niben101Scf02730g01028.1 45 PERKTQLAKKLGLQPRQVAVWFQNRRARWK 74
                              57899************************9 PP
2HD-ZIP_I/II98.94.7e-32391112092
               HD-ZIP_I/II  20 eeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                               +++  eperK++la++LglqprqvavWFqnrRAR+ktk lE+dy++Lk++yd+l ++ ++++k++e+L++e+ 
  Niben101Scf02730g01028.1  39 RRTSWEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKTLERDYDQLKSSYDSLLSDFDSMRKDNEKLKAEVV 111
                               556789***************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-123476IPR009057Homeodomain-like
SMARTSM003897.1E-43680IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.8E-134383IPR009057Homeodomain-like
PfamPF000461.1E-104574IPR001356Homeobox domain
CDDcd000867.18E-124576No hitNo description
PROSITE profilePS5007113.1194676IPR001356Homeobox domain
PRINTSPR000313.3E-64756IPR000047Helix-turn-helix motif
PROSITE patternPS0002705174IPR017970Homeobox, conserved site
PRINTSPR000313.3E-65672IPR000047Helix-turn-helix motif
PfamPF021831.3E-1676118IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGSGHIFFDP SCHGNMLFLG NSDPVFRGTC TCWRRALRRR TSWEPERKTQ LAKKLGLQPR  60
QVAVWFQNRR ARWKTKTLER DYDQLKSSYD SLLSDFDSMR KDNEKLKAEV VSLMEKLQGK  120
VVGGAGITNE KCEVLEVDAL TLQVKVKAED RLSSGSGGSA VVDEHSPQLV DSGDSYFHTG  180
HIEEYPIGAG GCINIPPPMD SLQSEEDDGS DDGGGHGYFS NVFVAAEEQQ HEEGEPIGWF  240
WS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622827.11e-143PREDICTED: homeobox-leucine zipper protein HAT5
RefseqXP_016509870.11e-143PREDICTED: homeobox-leucine zipper protein HAT5-like
SwissprotQ022836e-57HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A1S4D8T61e-142A0A1S4D8T6_TOBAC; homeobox-leucine zipper protein HAT5-like
STRINGXP_009622827.11e-142(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA78912330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-45homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]