PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02734g01013.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 165aa MW: 17779.7 Da PI: 11.0659

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02734g01013.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	109.9	3.8e-34	83	149	6	72
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssase 72 ++++++hTkv+gR+RR+R++a+ aar+F+L++eLG+++d++ti+WLlq a+p+i+ +tgt+ ++a + Niben101Scf02734g01013.1 83 TSTKDRHTKVEGRGRRIRMPATGAARVFQLTRELGHKTDGETIQWLLQHAEPSIISATGTGITPAIA 149 689*********************************************************9999844 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.6E-28	83	149	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.306	85	139	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MESKNTNNIN KSYMAAPPSA RRKQVAPPIA TPLISLKQEP HDMAEKPPAL PIIKVTLPTP 60 TLKQSVSPPH LSPPPPPHNK AVTSTKDRHT KVEGRGRRIR MPATGAARVF QLTRELGHKT 120 DGETIQWLLQ HAEPSIISAT GTGITPAIAV SVNGTVEIPP LKMAL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009803790.1	3e-91	PREDICTED: transcription factor TCP9-like
Swissprot	O64647	3e-41	TCP9_ARATH; Transcription factor TCP9
TrEMBL	A0A1U7YYI6	7e-90	A0A1U7YYI6_NICSY; transcription factor TCP9-like
STRING	XP_009803790.1	1e-90	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	1e-41	TCP family protein