PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02735g01004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 362aa MW: 41219.6 Da PI: 6.405

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02735g01004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.2	2.8e-52	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 + pGfrFhPtdeelv +yL++kv++k++++ e ik++diyk++PwdLpk + +ekewyf+++rd+ky+++ r+nr+t +g+Wka Niben101Scf02735g01004.1 14 MLPGFRFHPTDEELVGFYLRRKVQHKPISI-ELIKQLDIYKYDPWDLPKLAPVGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKA 97 579*************************.89***********8888899************************** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+d++++s+ +++ +glkk+Lvfykgra kg ktdW+mhe+rl Niben101Scf02735g01004.1 98 TGTDRPIYSSeGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 141 *****956677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.68E-55	12	143	IPR003441	NAC domain
PROSITE profile	PS51005	52.797	14	156	IPR003441	NAC domain
Pfam	PF02365	1.2E-25	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MEERNEKEKM DEVMLPGFRF HPTDEELVGF YLRRKVQHKP ISIELIKQLD IYKYDPWDLP 60 KLAPVGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGS KCIGLKKSLV 120 FYKGRAAKGI KTDWMMHEFR LPSITDSTAP KRFLDKHIPP PNSSFSFLVP ENTTSDFLTN 180 SHFTNYSNEI SLINKSSSPI QYSGSTIIDI QNSSSNMTTF STLDLPLYKA LNSNYDPITS 240 YTFSSCTETS EILPLPKCIN MNNNNIDASS LLLNMSSSIF GDYSIPLPEN IEGGGVLDQE 300 TILKEANHVN NMDHMEEQWR NVRSIGLLPL NMAADAWKTN LLWDSSPCPS SEMSTSYSTN 360 KC

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MEERNEKEKM DEVMLPGFRF HPTDEELVGF YLRRKVQHKP ISIELIKQLD IYKYDPWDLP  60
KLAPVGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGS KCIGLKKSLV  120
FYKGRAAKGI KTDWMMHEFR LPSITDSTAP KRFLDKHIPP PNSSFSFLVP ENTTSDFLTN  180
SHFTNYSNEI SLINKSSSPI QYSGSTIIDI QNSSSNMTTF STLDLPLYKA LNSNYDPITS  240
YTFSSCTETS EILPLPKCIN MNNNNIDASS LLLNMSSSIF GDYSIPLPEN IEGGGVLDQE  300
TILKEANHVN NMDHMEEQWR NVRSIGLLPL NMAADAWKTN LLWDSSPCPS SEMSTSYSTN  360
KC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-50	1	141	1	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016437383.1	0.0	PREDICTED: protein FEZ-like isoform X2
Swissprot	Q9ZVH0	2e-91	FEZ_ARATH; Protein FEZ
TrEMBL	A0A1S3XCA5	0.0	A0A1S3XCA5_TOBAC; protein FEZ-like isoform X2
STRING	XP_009782166.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2202	22	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	7e-94	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]