PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02736g03003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 323aa    MW: 36002.8 Da    PI: 8.9759
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02736g03003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00028193215123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++C+k+ +++  L +H   H
  Niben101Scf02736g03003.1 193 FQCEICNKVLKSSQALGSHKTIH 215
                               89*****************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.53E-5432No hitNo description
SMARTSM003550.025628IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-8629IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.367633IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SuperFamilySSF576673.28E-8193215No hitNo description
SMARTSM003550.038193215IPR015880Zinc finger, C2H2-like
PfamPF139123.6E-6193217IPR007087Zinc finger, C2H2
PROSITE profilePS501579.328193220IPR007087Zinc finger, C2H2
PROSITE patternPS000280195215IPR007087Zinc finger, C2H2
SuperFamilySSF576673.28E-8243270No hitNo description
PfamPF139121.5E-9247270IPR007087Zinc finger, C2H2
PROSITE profilePS501579.203248270IPR007087Zinc finger, C2H2
SMARTSM003550.17248270IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280250270IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSMEKHKCKL CSRKFSSGKA MGGHMRSHLR TLPLPPKTPP RKQDSAGGRS ESTLSILSLK  60
PEEEEEEIRE DKYLGYGLRE NPKKSCKIVD PEFLDGAGSV VLHENESETE STKKPTRRRS  120
KRTRRIFISE QATKVKKEKP AVFEPEPQPV SSFSDTSPEE DIAICLMMLS KDVWRSSYES  180
DESKFRELKQ GKFQCEICNK VLKSSQALGS HKTIHKKINS CIEDKNGGIK SKENSRQLRT  240
KNVDQKVHEC PFCGKIYGSG QALGGHKRSH LLSSSTTASS SSKVGDSLMD SSCAKFPNGF  300
IDLNMPAPIE DEDFSQPEVS GVS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758380.10.0PREDICTED: zinc finger protein ZAT9-like
RefseqXP_016481923.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A1S4AZH70.0A0A1S4AZH7_TOBAC; zinc finger protein ZAT9-like
TrEMBLA0A1U7V9840.0A0A1U7V984_NICSY; zinc finger protein ZAT9-like
STRINGXP_009758380.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.11e-28C2H2-like zinc finger protein