PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02740g07006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 184aa    MW: 21334 Da    PI: 9.8862
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02740g07006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF473.4e-151559145
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                              k+ien+  r+vtfskRr g+ KKA+EL  L ++++ +++fs+t k
  Niben101Scf02740g07006.1 15 KKIENEDDRYVTFSKRRSGLYKKASELVKLYNIDIGIVLFSPTRK 59
                              68****************************************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-17766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.142767IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-21881IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-14929IPR002100Transcription factor, MADS-box
PfamPF003191.9E-201663IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-142944IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-144465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEGKKTRGRQ SIPMKKIENE DDRYVTFSKR RSGLYKKASE LVKLYNIDIG IVLFSPTRKP  60
FSFFHPISEA IIDRFLNPSM QSNESTRLVA VDVRHKVNQL NNRREFFDNI KETTSARSIP  120
LDNMKQNGQR YQWESIEELN ADEVKKYEAL LSATVFNLNN RLKLLKNEAS SSSSSEAYSE  180
NTDN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595132.11e-106PREDICTED: agamous-like MADS-box protein AGL29
RefseqXP_016446656.11e-106PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A1S3Y3F21e-105A0A1S3Y3F2_TOBAC; agamous-like MADS-box protein AGL29
STRINGXP_009595132.11e-105(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-26AGAMOUS-like 61