PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02750g02001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 69aa MW: 8190.54 Da PI: 5.1905

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02750g02001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	26.4	2e-08	3	43	59	99
DUF260 59 sslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +sl+ eA++r ++PvyG++++ +kl+ +e+ ++el+ +++ Niben101Scf02750g02001.1 3 ESLFLEAKIRKENPVYGCLAIERKLKLAIEENEKELEIVQK 43 79**********************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	2.8E-6	3	42	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 69 aa Download sequence Send to blast
MSESLFLEAK IRKENPVYGC LAIERKLKLA IEENEKELEI VQKTNAFYKE MAKSQMQKYK 60 PALVEFEEY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019225769.1	1e-29	PREDICTED: LOB domain-containing protein 22-like
TrEMBL	A0A314KT00	2e-28	A0A314KT00_NICAT; Lob domain-containing protein 27
STRING	XP_009629106.1	1e-26	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2866	17	52