PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02752g10010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 221aa    MW: 25252.2 Da    PI: 7.4102
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02752g10010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.61.4e-05761161355
                               HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                               R+++ + ++ L++l+P+ +   +  K +   i+ + ++YIk L+
  Niben101Scf02752g10010.1  76 RRKMAEMYSVLQSLVPTlS---HVHKETRENIVAESTDYIKRLE 116
                               89***************44...9999***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.93763115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-873140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-774124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-476119No hitNo description
PROSITE profilePS516719.728156221IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MWKEMMKEET EEEEIERLFM GVMEGYKDTC IPPLTDFSTT NGMVGCSSLN YGKRQRKEGP  60
INENESINIQ KGREGRRKMA EMYSVLQSLV PTLSHVHKET RENIVAESTD YIKRLEQEIV  120
RLENLKKSFL VDKPALSQCR NRISTVNVTV SKGLAFIGIQ FQLCQGLMTK IFCVLDKHQA  180
EVLAANISVS DHRIATLTIT VMIGNNKRDI VENIQRELLV I
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630063.11e-139PREDICTED: uncharacterized protein LOC104120081
RefseqXP_016496901.11e-139PREDICTED: uncharacterized protein LOC107815786
TrEMBLA0A1S4C7261e-137A0A1S4C726_TOBAC; uncharacterized protein LOC107815786
STRINGXP_009630063.11e-138(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132481415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-06bHLH family protein