PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02756g00013.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 467aa MW: 51566.5 Da PI: 6.3548

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02756g00013.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.5	1.2e-08	333	380	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Niben101Scf02756g00013.1 333 SHSLAERIRREKISQRMKFLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 380 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.11E-10	327	384	No hit	No description
SuperFamily	SSF47459	4.06E-17	327	399	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.212	329	379	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-16	329	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.1E-6	333	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.2E-9	335	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MDKDYFSNGG IPPLLHFEPK IPLNSLFSPH ELNSISDQYT QFDSALSSMV SSPVASNSAN 60 SNDNFALREL IGKLGTICSS PSPQFIDYAV NYDHINNSDS TMTSCYSTPL NSPPKLRDNI 120 PNFDISVPVN PPQFPALSAN PESSHRATNF SCFVSSSFNG GTSQFGLNNI ELSHRSRNEP 180 IGSVKLSRIS SSRSLVLQNK NSGQTPVEMM CETLDLGKIS CPNNANSNED CSVSEQILSG 240 EMGSKTSNVL NSRKRKAVSR GKGKSYNEAE AENGTKEKRS KPTEGNGKKN GTVKMEEING 300 SEGDETEKET KEDQKTTKDW IHVRARRGQA TDSHSLAERI RREKISQRMK FLQDLVPGCN 360 KVTGKALMLD EIINYVQSLQ RQVEFLSMKL ASLNPRMDFH IDNFISKDVC QPNGSLSQVF 420 PIDGFCENLT QLHTICEDEL QTIVQMGFSH QDLTLQSQAF PAPNSTS

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MDKDYFSNGG IPPLLHFEPK IPLNSLFSPH ELNSISDQYT QFDSALSSMV SSPVASNSAN  60
SNDNFALREL IGKLGTICSS PSPQFIDYAV NYDHINNSDS TMTSCYSTPL NSPPKLRDNI  120
PNFDISVPVN PPQFPALSAN PESSHRATNF SCFVSSSFNG GTSQFGLNNI ELSHRSRNEP  180
IGSVKLSRIS SSRSLVLQNK NSGQTPVEMM CETLDLGKIS CPNNANSNED CSVSEQILSG  240
EMGSKTSNVL NSRKRKAVSR GKGKSYNEAE AENGTKEKRS KPTEGNGKKN GTVKMEEING  300
SEGDETEKET KEDQKTTKDW IHVRARRGQA TDSHSLAERI RREKISQRMK FLQDLVPGCN  360
KVTGKALMLD EIINYVQSLQ RQVEFLSMKL ASLNPRMDFH IDNFISKDVC QPNGSLSQVF  420
PIDGFCENLT QLHTICEDEL QTIVQMGFSH QDLTLQSQAF PAPNSTS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016502420.1	0.0	PREDICTED: transcription factor bHLH78-like
TrEMBL	A0A1S4CMZ2	0.0	A0A1S4CMZ2_TOBAC; transcription factor bHLH78-like
STRING	XP_009771720.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1057	23	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	5e-58	bHLH family protein