PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02757g03009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 322aa    MW: 36628.4 Da    PI: 8.0601
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02757g03009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.83.8e-13125167754
                               HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                 Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  Niben101Scf02757g03009.1 125 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 167
                               57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.425118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-17119182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.82E-12121172No hitNo description
Gene3DG3DSA:4.10.280.106.1E-17124183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-15124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10125167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MKHQNKTRNI FREEKNKRTC YFSHLYIPTR LLLNSNHFLK LTSPLPTKNL KHNVSPPSAS  60
FSLHPLSLPK KMENIGDEYK NYWETNMFLQ NEELDSSYFD EAISAYYDSS SPDGAQSSLA  120
SKNIVSERNR RKKLNERLFA LRAVVPNISK MDKASIIKDA IDYIQELHDQ ERKIQAEITE  180
LESGRSKKNT SVEFDQDGSF DAKPKRSRTL EQQYGYDSSG STTRSSPSSS PVEVLELRVS  240
SMGEKTVVVS LTCSKRTDTM VKVCEIFESL NIKIISANIT AFSGRLLKTA FIEAEEEEKE  300
LLKMRIETAI ATLNDPDSPM ST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-13123177963Transcription factor MYC2
5gnj_B1e-13123177963Transcription factor MYC2
5gnj_E1e-13123177963Transcription factor MYC2
5gnj_F1e-13123177963Transcription factor MYC2
5gnj_G1e-13123177963Transcription factor MYC2
5gnj_I1e-13123177963Transcription factor MYC2
5gnj_M1e-13123177963Transcription factor MYC2
5gnj_N1e-13123177963Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760780.10.0PREDICTED: transcription factor bHLH35-like isoform X1
RefseqXP_016449298.10.0PREDICTED: transcription factor bHLH35-like isoform X1
RefseqXP_019259717.10.0PREDICTED: transcription factor bHLH35 isoform X1
SwissprotQ2HIV98e-90BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A1S3YBB01e-180A0A1S3YBB0_TOBAC; transcription factor bHLH35-like isoform X1
TrEMBLA0A1U7VG061e-180A0A1U7VG06_NICSY; transcription factor bHLH35-like isoform X1
TrEMBLA0A314LD781e-180A0A314LD78_NICAT; Transcription factor bhlh35
STRINGXP_009760780.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.15e-83bHLH family protein